Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi10g0575 | ATGCATTGTGAAAATATTGCAGCAGCATGTGGCCGTCTGTCTTCTTGTCAATATACTGGAAAGCCTCATCTTCATTGCTCCACCAGACGACCAATATTGTCTTTGCCTTCTAATAAGGTGGAACTAATGCAAACATTAAACATTGTCGGTTCTACGGGGACGGGGAGAACGGATATGGCATCTCGCTTTGGACTTGCTCTTCTAGCTTTTGTCATTTGTTTGAATATCAATTCGGTCGATTCAGAAGACGGAGCAACATTGCTGGAGATAAAGAAGTCGTTCAGGGATGTGGATAATGTTCTATATGACTGGACAGACTCTCCATCTTCCGATTATTGTGTCTGGAGAGGGGTCTCGTGCGATAATATCACCTTAAATGTCGTTGCACTCAACCTTTCAGGTTTAAATCTTGACGGTGAAATCTCGCCTGCAATAGGAGGACTTGAGAGCTTGATCTCTATTGACCTTAGGGGAAACCGTCTATCAGGCCAGATACCAGATGAGATTGGTGACTGTTCTTCTTTGAAGAGCTTGGACTTGTCATTTAATGAGATACGGGGGGACATACCATTTTCAATTTCCAAGTTGAAACAACTGGAAAATCTAATATTGAAAAATAACCAGTTAATTGGACCGATTCCTTCAACCTTATCTCAGATTCCTAACTTGAAGATTCTAGACCTGGCACAAAACAATCTTAGCGGTGAAATACCGAGGCTTATATACTGGAACGAAGTTTTGCAGTATCTTGGACTGCGAGGGAACAATTTCGTGGGTTCGCTCTCTCCAGACATGTGCCAGTTGACTGGATTATGGTATTTTGATGTAAGGAATAACAGCTTGACAGGCAGCATTCCGGAAAGTATAGGCAACTGTACTGCCTTCCAGGTCTTGGATTTATCCTACAACCAGCTGACTGGAAAGATACCATTCAATATTGGGTTTCTTCAAGTAGCGACATTGTCATTGCAAGGGAACCAACTCTCTGGGCATATTCCATCGGTGATCGGGCTGATGCAAGCGCTTGCTGTGTTAGATTTGAGTTGTAACATGTTAACTGGACCAATCCCCCCTATCCTGGGAAATTTGACTTACACAGAAAAATTGTATTTGCATGGAAATAAGCTGACTGGCTCAATTCCCCCGGAGCTGGGAAACATGACAAAACTTCACTATCTGGAATTGAATGATAACCATTTAAGTGGATATATCCCACCTGAACTTGGAAAGCTTACTGACCTGTTTGACTTAAATGTTGCTAACAACAAGCTTGAAGGGTCAATTCCTGATCATATCAGCTCATGTAAAAATCTTAATAGCCTCAATGTGCATGGGAACAAATTGAATGGAACAATCCCCTCAGCTTTTCAGAGTTTGGAGAGTATGACGTATCTGAATCTTTCCTCCAACAATCTTCAAGGCTTCATTCCAATTGAGCTGTCACGGATTGGTAATTTGGATACATTGGATATTTCAAATAATAATATAAGTGGCTCCATTCCTTCTTCCCTCGGTGACTTGGAACATCTTCTGAAGCTGAATCTGAGCAGAAATCATTTAACCGGATTTATTCCAGCAGAGTTTGGTAATTTAAGAAGTGTTATGGAAATAGATCTTTCAAATAATCAACTCTCTGGTTTGATTCCTGAAGAACTTAGTCAGCTTCAGAACATGATGTCTTTGAGACTGGAAAACAACAAACTATCTGGGGATGTGACGTCACTTATAAATTGCCTTAGTCTTTCTCTACTTAATGTGTCCTATAACAACTTAGTTGGTGTTATTCCCACAAGCAATAACTTCTCCAGGTTTTCCCCTGACAGTTTCATTGGAAACTCTGGTCTTTGCGGCTATTGGATGAATTTGCCTTGTCATGGATCTCACCCCACAGAGCGAGTTACGTTATCTAAGGCAGCTATCCTAGGAATTGCTCTTGGTGCTCTTGTGATTCTTCTTATGATATTACTGGCAGCTTGTCGGCCATACAATCCATCCCCTTTTCCTGATGGATCACTTGACAAACCAGTTAATTACTCACCACCAAAGCTAGTGATTCTTCATATGAATATGGCACTTCATGTGTATGAGGATATTATGAGGGTGACTGAGAACCTGAGCGAGAGGTATATAATTGGATATGGTGCATCAAGCATGGTATATAAATGTGTTCTTAAGAATTGCAAGCCAGTGGCCATCAAGAGGCTGTATTCTCACTATCCCCAATGCTTGAAAGCATTCGAGACAGAACTCGAGACAGTCGGTAGCATCAAGCACCGGAATCTGGTTAGTCTCCAAGGTTACTCCTTGTCCCCTTATGGGAACCTTCTCTTCTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTTCATGGACCTTCCAAGAAGAAAAAACTCGACTGGGATCTGCGTTTAAAAATAGCACTTGGAGCAGCCCAAGGGCTCGCTTATCTGCACCATGATTGCAGTCCCCGTATCATCCACAGGGACGTGAAATCATCTAATATTTTGTTGGACAAGGAGTTTGAGGCCCATCTCACGGACTTCGGAATTGCTAAAATTCTATGCCCCTCGAAGTCCTACACTTCAACTTACATAATGGGCACAATCGGTTATATTGACCCCGAATATGCTAGAACTTCCCGGCTCACTGAGAAATCTGATGTTTATAGCTACGGTGTCGTTTTACTCGAGTTGCTGACCGGGAGGAAAGCTGTTGACAATGAATCCAATCTCCATCATCTGATTTTGTCTAAGACGGCAAGCAATGCGGTGATGGAAACCGTTGATCCGGATATTAGTGCCACGTGTAAGGATCTGGGAGCAGTAAAAAAGGTTTTTCAGCTTGCTCTTTTATGCACCAAGAGACAGCCGGTTGACAGGCCAACGATGCATGAGGTGACACGGGTGCTGGGAAGCCTTGTGCCATCCGTGACCCCACCAATACAAGCAACCCCACTACCTGCTGCTGCTGCGGCTCCACTTGCATCTGCCAAGGCGCCGTGCTACGTGGATGAGTATGCAAATCTCAAGGCTCCACACTTGGTGAACTGCCCATCCATGAGCACCTCTGACGCCCAGCTGTTCCTCAAATTTGGAGAGGTAATTTCGCAGAACAGTGAATGA | 3126 | 0.4328 | MHCENIAAACGRLSSCQYTGKPHLHCSTRRPILSLPSNKVELMQTLNIVGSTGTGRTDMASRFGLALLAFVICLNINSVDSEDGATLLEIKKSFRDVDNVLYDWTDSPSSDYCVWRGVSCDNITLNVVALNLSGLNLDGEISPAIGGLESLISIDLRGNRLSGQIPDEIGDCSSLKSLDLSFNEIRGDIPFSISKLKQLENLILKNNQLIGPIPSTLSQIPNLKILDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNFVGSLSPDMCQLTGLWYFDVRNNSLTGSIPESIGNCTAFQVLDLSYNQLTGKIPFNIGFLQVATLSLQGNQLSGHIPSVIGLMQALAVLDLSCNMLTGPIPPILGNLTYTEKLYLHGNKLTGSIPPELGNMTKLHYLELNDNHLSGYIPPELGKLTDLFDLNVANNKLEGSIPDHISSCKNLNSLNVHGNKLNGTIPSAFQSLESMTYLNLSSNNLQGFIPIELSRIGNLDTLDISNNNISGSIPSSLGDLEHLLKLNLSRNHLTGFIPAEFGNLRSVMEIDLSNNQLSGLIPEELSQLQNMMSLRLENNKLSGDVTSLINCLSLSLLNVSYNNLVGVIPTSNNFSRFSPDSFIGNSGLCGYWMNLPCHGSHPTERVTLSKAAILGIALGALVILLMILLAACRPYNPSPFPDGSLDKPVNYSPPKLVILHMNMALHVYEDIMRVTENLSERYIIGYGASSMVYKCVLKNCKPVAIKRLYSHYPQCLKAFETELETVGSIKHRNLVSLQGYSLSPYGNLLFYDYMENGSLWDLLHGPSKKKKLDWDLRLKIALGAAQGLAYLHHDCSPRIIHRDVKSSNILLDKEFEAHLTDFGIAKILCPSKSYTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGVVLLELLTGRKAVDNESNLHHLILSKTASNAVMETVDPDISATCKDLGAVKKVFQLALLCTKRQPVDRPTMHEVTRVLGSLVPSVTPPIQATPLPAAAAAPLASAKAPCYVDEYANLKAPHLVNCPSMSTSDAQLFLKFGEVISQNSE | 1041 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi10g0575 | 1041 | SUPERFAMILY | L domain-like | 83 | 364 | - | - | |
| Glsi10g0575 | 1041 | ProSitePatterns | Protein kinases ATP-binding region signature. | 711 | 733 | IPR017441 | GO:0005524 | |
| Glsi10g0575 | 1041 | FunFam | LRR receptor-like serine/threonine-protein kinase ERL1 | 80 | 244 | - | - | |
| Glsi10g0575 | 1041 | ProSiteProfiles | Leucine-rich repeat profile. | 222 | 244 | IPR001611 | GO:0005515 | |
| Glsi10g0575 | 1041 | ProSiteProfiles | Leucine-rich repeat profile. | 174 | 197 | IPR001611 | GO:0005515 | |
| Glsi10g0575 | 1041 | SUPERFAMILY | Protein kinase-like (PK-like) | 682 | 971 | IPR011009 | - | |
| Glsi10g0575 | 1041 | ProSiteProfiles | Protein kinase domain profile. | 705 | 978 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Glsi10g0575 | 1041 | PANTHER | LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED | 385 | 971 | - | - | |
| Glsi10g0575 | 1041 | Gene3D | Ribonuclease Inhibitor | 354 | 627 | IPR032675 | - | |
| Glsi10g0575 | 1041 | Gene3D | Transferase(Phosphotransferase) domain 1 | 781 | 979 | - | - | |
| Glsi10g0575 | 1041 | Pfam | Leucine rich repeat N-terminal domain | 81 | 121 | IPR013210 | - | |
| Glsi10g0575 | 1041 | SMART | LRR_typ_2 | 387 | 411 | IPR003591 | - | |
| Glsi10g0575 | 1041 | SMART | LRR_typ_2 | 220 | 244 | IPR003591 | - | |
| Glsi10g0575 | 1041 | SMART | LRR_typ_2 | 268 | 292 | IPR003591 | - | |
| Glsi10g0575 | 1041 | SMART | LRR_typ_2 | 459 | 483 | IPR003591 | - | |
| Glsi10g0575 | 1041 | SMART | LRR_typ_2 | 148 | 172 | IPR003591 | - | |
| Glsi10g0575 | 1041 | SMART | LRR_typ_2 | 531 | 554 | IPR003591 | - | |
| Glsi10g0575 | 1041 | SMART | LRR_typ_2 | 507 | 530 | IPR003591 | - | |
| Glsi10g0575 | 1041 | FunFam | LRR receptor-like serine/threonine-protein kinase ERL1 | 355 | 627 | - | - | |
| Glsi10g0575 | 1041 | SUPERFAMILY | L domain-like | 317 | 604 | - | - | |
| Glsi10g0575 | 1041 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 781 | 981 | - | - | |
| Glsi10g0575 | 1041 | Gene3D | Ribonuclease Inhibitor | 80 | 243 | IPR032675 | - | |
| Glsi10g0575 | 1041 | ProSiteProfiles | Leucine-rich repeat profile. | 485 | 508 | IPR001611 | GO:0005515 | |
| Glsi10g0575 | 1041 | Gene3D | Ribonuclease Inhibitor | 244 | 353 | IPR032675 | - | |
| Glsi10g0575 | 1041 | SMART | serkin_6 | 705 | 971 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Glsi10g0575 | 1041 | Pfam | Leucine rich repeat | 437 | 496 | IPR001611 | GO:0005515 | |
| Glsi10g0575 | 1041 | Pfam | Leucine rich repeat | 174 | 233 | IPR001611 | GO:0005515 | |
| Glsi10g0575 | 1041 | FunFam | LRR receptor-like serine/threonine-protein kinase ERL1 | 245 | 354 | - | - | |
| Glsi10g0575 | 1041 | Pfam | Leucine Rich Repeat | 510 | 531 | IPR001611 | GO:0005515 | |
| Glsi10g0575 | 1041 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 676 | 780 | - | - | |
| Glsi10g0575 | 1041 | Pfam | Protein kinase domain | 710 | 968 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Glsi10g0575 | 1041 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 826 | 838 | IPR008271 | GO:0004672|GO:0006468 | |
| Glsi10g0575 | 1041 | Gene3D | Phosphorylase Kinase; domain 1 | 678 | 780 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi10g0575 | Glsi-ChrGlsi10 | 3612557 | 3623465 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi10g0575 | 316 | 596 | Receptor kinase-like Gene Family | AT5G07180 | 36.928 | 2.87e-42 | 165 |
Transcription factors information