Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0574 ATGAAAATCTCCTCGTCCACAAGTTCGCTCTCGATCTCCTACGTCTCTTCGTTTCTCTTTCCTCCGCCTCCGATCATGGCGACTCATCTACTGAAACTTTGTCTCTCTCCTCAACCGAAGCTCTGCTTAAGTTACAGTAGAGACCGTGATGTCCCCGACGTTGACTTCATTTCTCTACTGGCGGCGAAACGACATCGCAGCTTCAGACGCCGAAGCATTTTCCGGCCACAGTCGGGCCCTAAATTTGTCATATCAAACTCCCTTGAAACTAGAATTGACTCACAGGAAGCAACCCTGCAAGGCCAGGGGCAGAGCAAAGATTCGCCCGTTTTACTAGATGTTACTGGAATGATGTGTGGAGCTTGCGTCTCCCGAGTAAAAAACATCTTGTCCGCCGATGAGCGAGTCGACTCGGTTGTTGTCAACATGCTGACTGAAACCGCCGCGGTTAAGTTGAGAAAACTCGAGGAGGCACCGTCGGGGGCTTCAGTTTTGGAGACCGATTATCCGGACTGTGTTGCAGAGAGCCTTGCTCGGAGATTGACTGAATGCGGTTTTCCGACAAAGAGGAGGGTTTCGGGTTTGGGCGTGGCGGAAAATGTGAGGAAGTGGAAGGAGTTGGTGAAGAAGAAGGAAGAATTGCTTGTGAAGAGTCGGAACCGTGTTGCTTTTGCTTGGACTTTGGTGGCGCTGTGTTGTGGATCGCATGCTTCGCATATTTTCCATTCTTTAGGAATTCACATTGCTCACGGAGGACCGCTATTGGAAGTTCTTCATAATTCGTATGTGAAGGGTGGTTTAGCTTTGGGGGCTCTTTTGGGACCGGGTCGAGAATTACTGTTCGATGGCCTAATGGCATTTAAGAAGGGATCACCAAATATGAACTCTCTTGTGGGATTTGGTTCTATAGCTGCCTTTATCATCAGTTCGATCTCACTATTTAACCCTGGGCTGGCATGGGACGCTTCATTCTTTGATGAACCGGTCATGCTTCTTGGTTTTGTGCTTCTAGGACGTTCTCTGGAAGAAAAGGCGAGGATTCAGGCATCTAGCGATATGAATGAACTTCTTTCGCTGATATCTACTCAATCAAGACTTGTGATTACTTCCTCAGAAGGCGCTCCTTCTAATGACAATGTGCTTTGCTCTGATGCAATTTGTGTTGAAGTCCCAACTGACAATATTCGAGTAGGTGACTCACTGTTGGTGTTACCTGGAGAAACTATTCCTGTAGATGGGAGGGTTATTTCAGGAAGAAGCATTGTGGATGAATCCATGCTTACAGGAGAATCACTTCCTGTGTTTAAAGAAGAAGGCCTTGCAGTTTCAGCAGGAACTATAAATTGGGATGGTCCTTTAAGAATTGAAGCTTCTTCTACTGGCTCCAACACAATGATATCCAAAATTGTCCGCATGGTTGAGGATGCTCAATCACGTGAAGCACCAGTACAAAGGCTTGCAGATTCAATAGCAGGACCTTTTGTATACGGTGTAATGACTCTGTCAGCAGCAACATTTGCATTTTGGTATTTTATTGGATCACACGTTTTTCCAGATGTTTTACTTAACGATATTGCAGGCCCAGAAGGAGATCCTTTGCTTTTGAGCTTGAAACTCTCTGTAGATGTCTTGGTTGTGTCTTGCCCTTGTGCACTGGGTCTTGCCACACCCACAGCAATCCTAGTTGGCACCTCACTTGGGGCAAGAAAAGGACTTCTCATTCGAGGAGGAGATGTGCTGGAACGCTTAGCTAGCATAAATTATGTTGCTCTGGACAAGACCGGAACCATCACCAGAGGAAAACCAGTTGTTTCTGCTGTAGCGTCTTTTGATTATGGAGAATCAGAAATTCTTCAGATTGCTGCTGCAGTGGAGAAAACAGCATCTCATCCAATAGCAAAGGCTATTATCAATAAAGCTGAGTCATTAGAATTGATCCTTCCTGTCTCAAAAGGGCAGTTAGTTGAACCAGGTTTTGGAACCTTGGCAGATATAGATGGGCGTTTGGTCGCAGTTGGTTCTTTAGAATGGGTACGTGAGCGCTTCCAGACAAAAATGAACCCATCTGATTTGATGAATCTGGAACATGTTTTGATGAATCAATCATTGGAAAAGACATCTTCAAACTATTCAAAAACCATTGTTTATGTTGGACGTGAAGGAGAAGGCATCATTGGTGCTATTGCCATATCTGACATTTTACGTGATGATGCTAAATCTACCGTAATGAGACTCCAGCAGAAGGGTATTAAAATAGTCCTCTTATCAGGGGACAGGGAAGAGGCAGTTGCAACTATAGCAGAGACAGTTGGGATAGAAAATAGTTTAGTCAAAGCATCATTGTCTCCACAACAGAAATCTAAATTTATTTCATCTCTTAAAGCTGCTGGACATCGTGTTGCTATGGTAGGTGATGGCATAAATGATGCACCCTCTTTGGCTGTAGCTGATGTTGGGATTGCTCTGCAGAATGAAGCTCAGGAGAATGCTGCATCAGATGCAGCATCCATTATACTTATTGGGAATAAAATTTCACAAGTTGTGGATGCACTAGAACTTGCACAGGCAACCATGGCAAAAGTGTACCAGAATTTGTCTTGGGCTGTAGCTTATAATGTTGTCGCCGTACCCATCGCTGCTGGTGTGTTACTTCCCCAATTTGAATTTGCTATGACACCTTCACTTTCGGGAGGACTGATGGCTTTGAGCTCCATCTTCGTGGTTGCCAACTCATTGCTTCTGCAGCTTCATGAGTACAAGACAACCAGTAGGGGCTCGCTTTAA 2784 0.4501 MKISSSTSSLSISYVSSFLFPPPPIMATHLLKLCLSPQPKLCLSYSRDRDVPDVDFISLLAAKRHRSFRRRSIFRPQSGPKFVISNSLETRIDSQEATLQGQGQSKDSPVLLDVTGMMCGACVSRVKNILSADERVDSVVVNMLTETAAVKLRKLEEAPSGASVLETDYPDCVAESLARRLTECGFPTKRRVSGLGVAENVRKWKELVKKKEELLVKSRNRVAFAWTLVALCCGSHASHIFHSLGIHIAHGGPLLEVLHNSYVKGGLALGALLGPGRELLFDGLMAFKKGSPNMNSLVGFGSIAAFIISSISLFNPGLAWDASFFDEPVMLLGFVLLGRSLEEKARIQASSDMNELLSLISTQSRLVITSSEGAPSNDNVLCSDAICVEVPTDNIRVGDSLLVLPGETIPVDGRVISGRSIVDESMLTGESLPVFKEEGLAVSAGTINWDGPLRIEASSTGSNTMISKIVRMVEDAQSREAPVQRLADSIAGPFVYGVMTLSAATFAFWYFIGSHVFPDVLLNDIAGPEGDPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGARKGLLIRGGDVLERLASINYVALDKTGTITRGKPVVSAVASFDYGESEILQIAAAVEKTASHPIAKAIINKAESLELILPVSKGQLVEPGFGTLADIDGRLVAVGSLEWVRERFQTKMNPSDLMNLEHVLMNQSLEKTSSNYSKTIVYVGREGEGIIGAIAISDILRDDAKSTVMRLQQKGIKIVLLSGDREEAVATIAETVGIENSLVKASLSPQQKSKFISSLKAAGHRVAMVGDGINDAPSLAVADVGIALQNEAQENAASDAASIILIGNKISQVVDALELAQATMAKVYQNLSWAVAYNVVAVPIAAGVLLPQFEFAMTPSLSGGLMALSSIFVVANSLLLQLHEYKTTSRGSL 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0574 927 PRINTS P-type cation-transporting ATPase superfamily signature 423 437 - -
Glsi10g0574 927 PRINTS P-type cation-transporting ATPase superfamily signature 726 737 - -
Glsi10g0574 927 PRINTS P-type cation-transporting ATPase superfamily signature 590 604 - -
Glsi10g0574 927 PRINTS P-type cation-transporting ATPase superfamily signature 748 758 - -
Glsi10g0574 927 PRINTS P-type cation-transporting ATPase superfamily signature 803 822 - -
Glsi10g0574 927 SUPERFAMILY HMA, heavy metal-associated domain 110 152 IPR036163 GO:0046872
Glsi10g0574 927 Pfam haloacid dehalogenase-like hydrolase 586 817 - -
Glsi10g0574 927 CDD P-type_ATPase_HM 221 913 - -
Glsi10g0574 927 Gene3D - 581 854 IPR023214 -
Glsi10g0574 927 Gene3D - 107 191 - -
Glsi10g0574 927 SUPERFAMILY Calcium ATPase, transmembrane domain M 307 584 IPR023298 -
Glsi10g0574 927 Gene3D - 346 477 - -
Glsi10g0574 927 SFLD Haloacid Dehalogenase 573 856 - -
Glsi10g0574 927 NCBIfam HAD-IC family P-type ATPase 376 895 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi10g0574 927 Pfam Heavy-metal-associated domain 112 157 IPR006121 GO:0046872
Glsi10g0574 927 SUPERFAMILY HAD-like 589 911 IPR036412 -
Glsi10g0574 927 SUPERFAMILY Calcium ATPase, transduction domain A 384 473 IPR008250 -
Glsi10g0574 927 ProSiteProfiles Heavy-metal-associated domain profile. 108 189 IPR006121 GO:0046872
Glsi10g0574 927 FunFam Copper-transporting ATPase PAA2, chloroplastic 601 734 - -
Glsi10g0574 927 PANTHER ATP7, ISOFORM B 99 916 - -
Glsi10g0574 927 Pfam E1-E2 ATPase 384 570 - -
Glsi10g0574 927 NCBIfam heavy metal translocating P-type ATPase 294 914 IPR027256 GO:0006812|GO:0016020|GO:0019829
Glsi10g0574 927 FunFam Copper-transporting ATPase 1, putative 346 477 - -
Glsi10g0574 927 SFLD p-type atpase 573 856 IPR044492 -
Glsi10g0574 927 Gene3D - 601 734 IPR023299 GO:0000166
Glsi10g0574 927 CDD HMA 112 151 IPR006121 GO:0046872
Glsi10g0574 927 ProSitePatterns E1-E2 ATPases phosphorylation site. 592 598 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0574 Glsi-ChrGlsi10 3604487 3612378 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0574 286 918 Primary Pumps ATPases AT1G63440 35.703 6.19e-114 371