Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0566 ATGGGGAGGAGTCCATGTTGCTCCAAAGAAGGACTGAACAGAGGAGCCTGGACTGCCCTGGAAGACGAGTTACTCACTTCTTACATTAAGTCCCACGGCCATGGCAAATGGGGAAACCTCCCCAAAAGAGCTGGCTTGAAACGATGTGGGAAAAGCTGTAGGCTTAGATGGTTGAACTATCTAAGGCCTGACATTAAGCGAGGTAACATAACACACGATGAAGAGGAACTCATTATTAGGCTGCATAAACTTCTTGGTAACAGATGGTCTCTCATAGCTGGAAGACTACCCGGGCGAACAGACAACGAAATCAAGAACTACTGGAACACAACTCTGTCAAAGAAGCTCAAACCACAGTCATCTCCCGAATCGTCTCAACAACGTCCCTCAACCCCAATTACCCAACCACAAGCAATCCATCCCAAGCCCACTAGGTGCAAAAACGTGCTTATCACCATCAATCAATCTCAGACTTCACACACTACTGGTCCAAAACCTCAATCCGTACACGAGAATCAGAATCCAGATGTGAATTTTTTGAGTTCTGGAAGCAACGAATTCCAAGTAAATGCACTAGATTTCAGCAGAGACTTTAGCAACATGCCCATGAATGCTCACTCCCTACCTATTGACCAACTTATGGTCGATTGGTGGACCGCAGCTAATGAATTCCAGGACAATGCCTCTATGGATCTGGATTCCGTGGGTCTCCTGCTGGATTCTGTGGATTGGCCGTGA 738 0.4675 MGRSPCCSKEGLNRGAWTALEDELLTSYIKSHGHGKWGNLPKRAGLKRCGKSCRLRWLNYLRPDIKRGNITHDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTTLSKKLKPQSSPESSQQRPSTPITQPQAIHPKPTRCKNVLITINQSQTSHTTGPKPQSVHENQNPDVNFLSSGSNEFQVNALDFSRDFSNMPMNAHSLPIDQLMVDWWTAANEFQDNASMDLDSVGLLLDSVDWP 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0566 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Glsi10g0566 245 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi10g0566 245 MobiDBLite consensus disorder prediction 113 141 - -
Glsi10g0566 245 FunFam MYB-related transcription factor 13 66 - -
Glsi10g0566 245 SMART sant 66 114 IPR001005 -
Glsi10g0566 245 SMART sant 13 63 IPR001005 -
Glsi10g0566 245 CDD SANT 16 61 IPR001005 -
Glsi10g0566 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Glsi10g0566 245 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi10g0566 245 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Glsi10g0566 245 FunFam Transcription factor TT2 70 139 - -
Glsi10g0566 245 Gene3D - 14 66 - -
Glsi10g0566 245 CDD SANT 71 112 IPR001005 -
Glsi10g0566 245 Gene3D - 70 136 - -
Glsi10g0566 245 MobiDBLite consensus disorder prediction 113 138 - -
Glsi10g0566 245 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Glsi10g0566 245 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi10g0566 245 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0566 Glsi-ChrGlsi10 3554877 3555777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0566 1 203 MYB Transcription Factor Family AT4G38620 52.941 2.24e-64 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi10g0566 Myb_DNA-binding 8.7e-13 CL0123