Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0564 ATGGGTTGGGGTCACCTGGGAAGAAATGGGCACGTCAACTCAGGTAACCAAAGTTCCGGTGCGGAGGAAGTTCCCACTACCACTACCACCACCACTGGCACCGAACAATCTGTAACACGACGATTCCCCCTGGCGGCTCAGCCTGAGGTTATGAGAGCAGCTGAGAAGGATGATCAGTATGCCTCTTTCGTCTATGAAGCCTGCCGCGACGCCTTCCGTCATCTCTTTGGCACTAGAGTTGCAGTTGCCTACCAAAGTGAGACAAAACTCTTGGGACAGATGCTTTACTATGTGCTGACAACAGGTTCGGGACAACAGACGCTAGGAGAGGAATACTGTGACATCACACAGGTTGGAGGACCTTATGGACTTCCCCCTACTCCTGCAAGGCGTGCTCTTTTCATTGTATACCAGACAGCTGTTCCATATATTGCAGAGCGAATTAGTTCTAGAATTGCTTCCCGTGGCATTGTCCTTGCTGATTCACAATCTGCTGAGATCTATGGTGAAAATACCATTAGGAGCAGTGAATTTCAAACTTCTTTTGGGAGTGAACTTCCTTCTTCTTCTACATCAGGGCAATCTATTACAACTCTGACAAGGTTGAAGGAGAAACTGAGTGGATTTTGGTTGCATGTAATTCAGAGATGGCCTTCGATGCTTCCTATGGTTCGTGAGTTGTTGCAATTGGTTCTGCGTGCTAATCTCATGTTCTTCTATTTTGAAGGTCTCTATTATCATATATCAAAACGTGCTGCAGGTATTCGTTATGTGTTCATTGGAAAAGCATCAAATCAAAGGCCCAGATACCAAATTCTGGGAGTATTTCTTTTGATTCAACTTTGTATAATTGCTGTTGAAGGGCTGCGTCGAAGCAATTTATCTTCAATTGCAAGTTCAGTTCACCAGGCATCCTTTGGGACCCACCAGAGATCAGCAGGACGAGGTTTGCCTGTTTTAAATGAAGAAGGTACTCTGGCATCTTCAGATACTGACAAAGGAAGTGGGTTCTCTGACTCTTCACATTCTGAGTCCCAAGTAACTAGTGGAGTTAGTAAATGCACACTCTGCTTGAGTAATCGGCAACACCCAACAGCTACTTCCTGTGGCCACGTATTTTGCTGGAACTGTATAACGGAATGGTGCAACGAAAAGCCAGAATGCCCTCTTTGCCGCACCCCCCTAACACACTCAAGTCTAGTTTGTTTGTATCATTCAGACTTCTAG 1227 0.4564 MGWGHLGRNGHVNSGNQSSGAEEVPTTTTTTTGTEQSVTRRFPLAAQPEVMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVAYQSETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVGGPYGLPPTPARRALFIVYQTAVPYIAERISSRIASRGIVLADSQSAEIYGENTIRSSEFQTSFGSELPSSSTSGQSITTLTRLKEKLSGFWLHVIQRWPSMLPMVRELLQLVLRANLMFFYFEGLYYHISKRAAGIRYVFIGKASNQRPRYQILGVFLLIQLCIIAVEGLRRSNLSSIASSVHQASFGTHQRSAGRGLPVLNEEGTLASSDTDKGSGFSDSSHSESQVTSGVSKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPLTHSSLVCLYHSDF 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0564 408 MobiDBLite consensus disorder prediction 1 42 - -
Glsi10g0564 408 SUPERFAMILY RING/U-box 353 397 - -
Glsi10g0564 408 CDD RING-HC_PEX10 352 403 - -
Glsi10g0564 408 SMART ring_2 354 391 IPR001841 -
Glsi10g0564 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 328 405 IPR013083 -
Glsi10g0564 408 Pfam Ring finger domain 353 392 IPR001841 -
Glsi10g0564 408 ProSiteProfiles Zinc finger RING-type profile. 354 392 IPR001841 -
Glsi10g0564 408 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 43 406 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
Glsi10g0564 408 ProSitePatterns Zinc finger RING-type signature. 369 378 IPR017907 -
Glsi10g0564 408 Pfam Pex2 / Pex12 amino terminal region 57 291 IPR006845 -
Glsi10g0564 408 MobiDBLite consensus disorder prediction 10 41 - -
Glsi10g0564 408 FunFam Peroxisome biogenesis factor 10 329 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0564 Glsi-ChrGlsi10 3523865 3528238 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0564 349 404 C3H Transcription Factor Family AT4G27470 37.879 9.29e-10 57.0