Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0560 ATGGAGACCGAACATCAAGCTTCGAAAAGTGGTGAAGTAAGCATGGCGGAGAAGAAAACAGCTAACGGGGACGAAGTGGTGGTGGTTATTTCTGGCCAGCAGAGTCCAAATGCTATTGGACACAGCCAAAGTTCCAAAGGGACTAAATCTTTGCCTCCAAAGCAGAGCAGGGTGGATTCGCCTCACAGTATGTCCGTTGAGTTCACCACTGGCAATAGATCATCAAAGTCGTCATCTTTAAATCAGGCTTCCCCTGAGATAAGGTTCGGTTCTAGCCCAAATAAGTCTCCCGAAATTCCTACTCCCAAACCAAGCCTTACCCGGAGAAAGTCACTTCCAAGGTCAGTCTATAATAAGTCTAAATCAAGATTTGGGGATACACTTTATCCTGTTGATGCAATTTTGGAAGAGAGTAAAACTTCAACTTTGCCAGATGAGTTAGCGGTAAATTCGCCTAACAACAAATTTGCCGCTGCTAATAGGACAATCTCCATCACTTCCAATACTCCCAAGATACCATTAAAGGGATCTCCGGGATCAGCTGGAGAGGATGAGGATGAAATTATTTTCAACAAAGTTGAACAGAGTAAAGGGAAGCATAAGACAGTGAAGACTAAGGTTTTGATTGAGTGGATTGTATTTGCGTGCATTGCGGGGTGCCTGGTGGCTAGCTTGACTGTTGACAAATTAAAAAACATAACGATTCGGGGTTTGGAATTTTGGAAGTGGTGTGTGTTTGTGATGGTTCTCTTTTGTGGCATGTTAGTTACTAATTGGTTCATGCACATTATTGTTCTCATGATTGAAATGAACTTTTTGCTAAGGAAAAAGGTTCTGTATTTTGTTCATGGACTAAAGAGAAGTATTCAGTTCTTCATCTGGCTGGTTTTGGTTCTTCTGACATGGGTTCTGTTAATCAATCGTGGGCCCCAGCGATCAGAACTTGCCATTAACATTTTGAATCGTGTAACATGGACTCTTGTTTCTGTTCTCGTTGGGACATTCTTATGGTTGTTAAAGACGTTGCTGCTAAAATTGTTAGCAACAAATTTCCATGTCAAATCTTTCTTTTATAGAATTCAAGAATCAATCTGCCATCAGTATGTTCTACAGACTCTCTCCGGGCGTCCACTAATAGAGGAGGCTGAGAATGTCGGTAGATCGCCCAATGTTGGCCAATTTAGTTTCAGGAGTACAAGAGGTGAAGGAGGCACAAAGAAAGAGGTTCTTGATATGGCAAAACTTCGCAAGATGAAACAAGAGAGAGTTTCTGCTTGGAAAATGAAGACTTTGGTTGACGCAGTGACAAATTCAGGGCTGCCCACAATCTCCAATGTGCTAGACGGCAGTTTTTATGATGGAGGACACGAACAAACTGATAAAGATATTACAAATGAGATGGAAGCAACTGCTGCTGCCTATCACATTTTCAGGAATGTTGCGGCACCTGGTTGCCCGTACGTTGATGAGGATGACCTCCTGAGGTTCATGATTAAGGAAGAGGTGGATCTGTTGGCTCCCCTGTTCGAAGGAGAAGAGGCTGGACGAATTGACCGAAAGGCTTTAACAGACTGGGTGGTGAAGGTCTATCAGGAACGCAAAGCATTGGCATACGCCATAGGTGACACCAAGACAGCCGTAAAACAGTTGAACAAACTTGTGACAGGGATCCTGGTACTAGTGACCTTAATTGTGTGGCTTCTGCTGATGGAGGTTGCAACAACAAAAGTGCTTGTATTCCTCTCATCACAGCTAGTGCTTGCAACTTTCGTGATTGGAAACACATGCAAGAATATATTTGAAGCTATCATCTTTGTGTTTGTAATGCATCCATTTGATGTTGGTGATCGATGTGTTATTGAGGGGGTTCAGCTGTTGGTTGAAGAAATGAACATTTTGACAACGGTCTTCTTGAAGCTTGATAATGAGAAGGTGTACTATCCAAACGCAATTCTGGCCACGAAATCCATTAGCAATTATTACAGAAGCCCGGATATGGGTGACTTTGTCGAGTTTGCAATTGACTTTATGACACCAGTGGAGAGGATTGAAGCACTGAAAGAACAAATTCAAAGGTACGTGGAGAGAAATCCACAATACTGGCATCCTAGTCACATCGTAGTGGTGACGGAGATTGAAAATGTGGATAAAATTAAGATTGGTCTCGGTATTAGGCACACAATGAACTTTCAAGAATTTGGGGAGAAGAGCAAGCGGAGAACTGAACTAGTGATGGAACTAAAGAAAATAATTGAAAAGCTCAATATCGGATACAAGCTTCTTCCTCAGGCAGTTCATCTCAGCCCTATTGGATCAGACACGAGAGTACTTGCAAGTATGTGA 2343 0.4247 METEHQASKSGEVSMAEKKTANGDEVVVVISGQQSPNAIGHSQSSKGTKSLPPKQSRVDSPHSMSVEFTTGNRSSKSSSLNQASPEIRFGSSPNKSPEIPTPKPSLTRRKSLPRSVYNKSKSRFGDTLYPVDAILEESKTSTLPDELAVNSPNNKFAAANRTISITSNTPKIPLKGSPGSAGEDEDEIIFNKVEQSKGKHKTVKTKVLIEWIVFACIAGCLVASLTVDKLKNITIRGLEFWKWCVFVMVLFCGMLVTNWFMHIIVLMIEMNFLLRKKVLYFVHGLKRSIQFFIWLVLVLLTWVLLINRGPQRSELAINILNRVTWTLVSVLVGTFLWLLKTLLLKLLATNFHVKSFFYRIQESICHQYVLQTLSGRPLIEEAENVGRSPNVGQFSFRSTRGEGGTKKEVLDMAKLRKMKQERVSAWKMKTLVDAVTNSGLPTISNVLDGSFYDGGHEQTDKDITNEMEATAAAYHIFRNVAAPGCPYVDEDDLLRFMIKEEVDLLAPLFEGEEAGRIDRKALTDWVVKVYQERKALAYAIGDTKTAVKQLNKLVTGILVLVTLIVWLLLMEVATTKVLVFLSSQLVLATFVIGNTCKNIFEAIIFVFVMHPFDVGDRCVIEGVQLLVEEMNILTTVFLKLDNEKVYYPNAILATKSISNYYRSPDMGDFVEFAIDFMTPVERIEALKEQIQRYVERNPQYWHPSHIVVVTEIENVDKIKIGLGIRHTMNFQEFGEKSKRRTELVMELKKIIEKLNIGYKLLPQAVHLSPIGSDTRVLASM 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0560 780 MobiDBLite consensus disorder prediction 1 117 - -
Glsi10g0560 780 SUPERFAMILY Sm-like ribonucleoproteins 600 660 IPR010920 -
Glsi10g0560 780 MobiDBLite consensus disorder prediction 27 96 - -
Glsi10g0560 780 PIRSF Memb_At2g17000 9 779 IPR016688 -
Glsi10g0560 780 Gene3D - 611 660 IPR023408 -
Glsi10g0560 780 FunFam Predicted mechanosensitive ion channel 611 660 - -
Glsi10g0560 780 Pfam Mechanosensitive ion channel 552 756 IPR006685 GO:0016020|GO:0055085
Glsi10g0560 780 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 6 768 IPR016688 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0560 Glsi-ChrGlsi10 3502133 3505085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0560 84 768 Mechanosensitive Ion Channel Family AT5G12080 58.815 0.0 804