Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0559 ATGAACAAGAATTTGAGAGACAGCCCTCAAAGTCAGCAACTATCTCGGCAGTCCTCCAAATCCAATACTAAGCCGACGCAAACAGTGGAGGCACCTAGCCCTATTCCGCGTGGATGCTGTCGAGGTTTTAGTAGTGTCAAGACTATGGGACCAACTGTGTCAACCATGCACCAGCACCACTCTAGAACATTGGAAGCGAAGGTGGCAGATTTGGAAAAGGAACTGCAGAGGCAGACAGAACTCCGAATCATGTACAGGAAAAGAATGGAAAGAACGCAGGACTATTTGAGATACTGCCTTCAAATAGCACAAGAGAATGGGATCTTGGACCTCATTATCCGCTACAAAGGTGAAGTCCAACAATCTCCGTTGTCTGTCCACACTGCCAGCCCTCCAATTCAGACTCCCCTGCACCCCCACCACCCTGATCTTGCAGCCGTCATCGATCAAGCCAAAATCAACGGATGGGATATTGATCCAACTGAGATTGAATTGGAAAAGAAGATAGGGCAGGGAAGCACGGCAGACATTTACAGAGCAACATGGCGGGGATTTGATGTGGCGGTGAAGTGCATATCTACTGAGTTTTTCCGAACAAACGCCAACGGCGTCGTATTCTTTGCTCAAGAGATTGAGACTCTGTCTAGGCAGCGGCACCGCTTTGTGCTTCAGCTGATGGGTGCATGCCTGAATCCTCCTCACCATGCATGGGTGGTGACAGAGTACGTGAGCACCACGCTTAAGGATTGGCTTCATGGCCCTGGCAAGAGGCGCGCAGACAGAGTAGTACCACTCGCTCCCTTGAAAGACAGGGTGAGGAAGGCATTGGAGATTGCTCAAGCCATGCAGTATCTGCACGAACAGAAGCCAAGAGTGATTCACCGTGACCTCAAGCCTAGCAACATATTTTTGGACGATGCCATGCACGTCAGAGTCGCTGATTTTGGTCATGCCCGCTTCTTGGATGACCACGAAATGGCTCTCACCGGTGAAACAGGCAAGCCAACCTCCCTAATCGATCATCCTAAATCTTCAGGAACCTACGTGTACATGGCACCAGAGGTGATCCGATGCGAGCCTTATAATGAAAAATGCGATGTATACAGTTTTGGAATCATACTTAACGAGCTTCTAACTGGAAAATACCCTTACATTGAGACCGACTACGGTCCCACCAAGATAGCCGTGGAAGTTGTGGAGGGCAAGTTGAGGCCTAAGCTTCCAGACGACAAGGATGGCAAACTAGGGGAGCTCATCCAACTGATCGGCCTCTGTTGGGATGGGAATGCATCTACTCGACCATCCTTCGCGACAATCACTCGTAGCCTCAAAACCTACTTAAACAGCCTCTCCTTCAACTAG 1362 0.4963 MNKNLRDSPQSQQLSRQSSKSNTKPTQTVEAPSPIPRGCCRGFSSVKTMGPTVSTMHQHHSRTLEAKVADLEKELQRQTELRIMYRKRMERTQDYLRYCLQIAQENGILDLIIRYKGEVQQSPLSVHTASPPIQTPLHPHHPDLAAVIDQAKINGWDIDPTEIELEKKIGQGSTADIYRATWRGFDVAVKCISTEFFRTNANGVVFFAQEIETLSRQRHRFVLQLMGACLNPPHHAWVVTEYVSTTLKDWLHGPGKRRADRVVPLAPLKDRVRKALEIAQAMQYLHEQKPRVIHRDLKPSNIFLDDAMHVRVADFGHARFLDDHEMALTGETGKPTSLIDHPKSSGTYVYMAPEVIRCEPYNEKCDVYSFGIILNELLTGKYPYIETDYGPTKIAVEVVEGKLRPKLPDDKDGKLGELIQLIGLCWDGNASTRPSFATITRSLKTYLNSLSFN 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0559 453 Pfam Protein kinase domain 164 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0559 453 SUPERFAMILY Protein kinase-like (PK-like) 150 441 IPR011009 -
Glsi10g0559 453 ProSiteProfiles Protein kinase domain profile. 163 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0559 453 ProSitePatterns Serine/Threonine protein kinases active-site signature. 292 304 IPR008271 GO:0004672|GO:0006468
Glsi10g0559 453 Coils Coil 61 88 - -
Glsi10g0559 453 ProSitePatterns Protein kinases ATP-binding region signature. 169 190 IPR017441 GO:0005524
Glsi10g0559 453 MobiDBLite consensus disorder prediction 1 39 - -
Glsi10g0559 453 Gene3D Transferase(Phosphotransferase) domain 1 245 451 - -
Glsi10g0559 453 SMART serkin_6 163 447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0559 453 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 66 445 - -
Glsi10g0559 453 Gene3D Phosphorylase Kinase; domain 1 151 244 - -
Glsi10g0559 453 CDD STKc_MAP3K-like 169 443 - -
Glsi10g0559 453 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0559 Glsi-ChrGlsi10 3497586 3499403 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0559 156 450 MAP Kinase Kinase Kinase AT4G35780 35.473 1.09e-49 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-8 Glsi10g0559 Pkinase 2.7e-44 CL0016