Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0555 ATGGGGGATCCCAGGGCTGTTGTTCCGTATCATGATCCATATGATCTCCCACTCCCCCACAACATTCTCAATATCGGCAATGATAGTAATCCGACCCTTGCCGATTTATCCAATGAGCAATCTCCTTCGCTGCCCCCACAAAATGAAGGAATTTTAGAGGGTTATGCTTCGGGCCAAATGATTGAGGGCGTTGTGCATAATTTTTCCCGTGAAGGAGGGAACCATGACGCGGGTCCATCTAAACTACACGGGGAAAGTCATCCCGGGCCACAGAATTTCAGTGAAGTGGTACAACTTTCATTCTGGCCAGAACCACCAATCCCATTTATTTGTAGTTGCTGTCAAGTGCTCAGAGAAATAGTTCATACTAACGGTATTAAGTTTACAAAACTGGAGATTCATGGAAGACTTGGCATAATCTGTCATGCAATTCATCAACAGAATATCGGCGTGGGTTCTTCTGGCAATCATCAAATTCAAATGTTTGAGTACGTTTCTAACTTTTGGTTCTGCTTGACTACATGGTTCATGGACGAGTTCAAAAGCATAGAAGAAATCAAGATTTTTCTAGTGCAGTACTGCGTGGAGCAAAATGCAGCAGGCTACTTCGTTGTGCAAGATCCACTGTCAGCCTATTACGAGGCCCTCTGCATTGGAATGGACTGGACTGAAGATATAAATGATGACTTGGTTGATTTGACCCGTGACAATTCTGGGGGAATGTCTGATGAGGCCGAGGATGGCATGGAGAGGACTCCTAGGACTTGCCTTGCAGCACAGAGAGAGAGAGCAGGAAAGATGAAACTGAGTGATTTCAGTGACTACTTTCATCTACCTATTGAAGATGCTGCAAAGGAAGTAAACTTGTGCCCAACTGTTGTGAAGAAAATATGCCGGAAAGAAGGATTAGCCCGATGGCCTCACAGAAAGGTGAAGAGCATTATGAAGAAAATAAAGATATTGACAAGCAGTTTAAACTCAGAAGATGCAGTGTCAAAGGCGCGAACTCAAGCAGAAATTGAGAGACTTCGACAAGAAATGATTCAACATTGTGGCGGAGTTGTTCCAACTTCATTGAATTTCGAATAA 1089 0.4371 MGDPRAVVPYHDPYDLPLPHNILNIGNDSNPTLADLSNEQSPSLPPQNEGILEGYASGQMIEGVVHNFSREGGNHDAGPSKLHGESHPGPQNFSEVVQLSFWPEPPIPFICSCCQVLREIVHTNGIKFTKLEIHGRLGIICHAIHQQNIGVGSSGNHQIQMFEYVSNFWFCLTTWFMDEFKSIEEIKIFLVQYCVEQNAAGYFVVQDPLSAYYEALCIGMDWTEDINDDLVDLTRDNSGGMSDEAEDGMERTPRTCLAAQRERAGKMKLSDFSDYFHLPIEDAAKEVNLCPTVVKKICRKEGLARWPHRKVKSIMKKIKILTSSLNSEDAVSKARTQAEIERLRQEMIQHCGGVVPTSLNFE 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0555 362 PANTHER PROTEIN RKD4 87 348 IPR044607 GO:0003700
Glsi10g0555 362 Pfam RWP-RK domain 267 314 IPR003035 -
Glsi10g0555 362 ProSiteProfiles RWP-RK domain profile. 245 334 IPR003035 -
Glsi10g0555 362 MobiDBLite consensus disorder prediction 69 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0555 Glsi-ChrGlsi10 3480394 3481975 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0555 176 351 AtRKD Transcription Factor Family AT5G66990 23.671 1.91e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Glsi10g0555 RWP-RK 2.6e-20 No_clan