Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0554 ATGGCCTTTTATCAAATCCCTTTAATATATTCAATTCTGTCCGATTCAGGTCCGCATAAACCTACGCTTTCTCTTTCTCTCTCTTTCTTCGCTCACTGGTCAAATACTTTCCCATCTTTCCCTCCATTTACAGGCACACTCATTCTGGGCTTGTACCTCCAATTTGAGCTCGACATGGACGGAGGTGCTCCCTATAATCCTCGTACGGTTGAGGAGGTCTTTCGGGATTTCAAGGGTCGCCGAGCTGGCATGATTAAGGCCCTCACAACCGATGTTGAAGAGTTCTATCAGCAGTGTGATCCCGAGAAGGAAAATCTTTGCCTTTATGGATTTCCTAGTGAGCAGTGGGAAGTCAATCTGCCTGCTGAGGAGGTGCCTCCAGAGCTTCCAGAACCGGCATTGGGTATTAATTTTGCCAGAGATGGGATGCAAGAAAAAGACTGGCTATCCTTGGTTGCTGTCCACAGTGATGCATGGTTACTTGCTGTGGCTTTTTATTTTGGTGCTAGATTTGGATTTGACAAGGCTGATAGGAAGCGACTGTTTAATATGATAAATGAACTTCCAACAATATTTGAGGTTGTTACAGGGATGGCCAAGAAACAAGGAAAGGAAAAGTCAGTTTCCAATCATAGCAGTAACAAATCCAAATCAAACACTAAGCGAGGATCTGAATCTCAGGTAAAGTTTTCAAAGGCAATGCAAGCAAAGGATGAAGATGAGGAGGGTTTGGAAGAGGAAGATGAGGAGGAGCATGGGGAGACACTGTGTGGGGCATGTGGAGAGAACTATGCGGCTGATGAGTTCTGGATTTGCTGTGATATCTGCGAGAAGTGGTTCCACGGGAAGTGTGTGAAGATCACCCCTGCAAGGGCCGAGCATATCAAGCAGTATAAATGTCCATCCTGTAGCAACAAGAGGGCTCGACCTTGA 933 0.4577 MAFYQIPLIYSILSDSGPHKPTLSLSLSFFAHWSNTFPSFPPFTGTLILGLYLQFELDMDGGAPYNPRTVEEVFRDFKGRRAGMIKALTTDVEEFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFNMINELPTIFEVVTGMAKKQGKEKSVSNHSSNKSKSNTKRGSESQVKFSKAMQAKDEDEEGLEEEDEEEHGETLCGACGENYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0554 310 PANTHER CPG BINDING PROTEIN 66 309 IPR045104 GO:0006355|GO:0042393
Glsi10g0554 310 ProSitePatterns Zinc finger PHD-type signature. 257 303 IPR019786 -
Glsi10g0554 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 305 IPR013083 -
Glsi10g0554 310 MobiDBLite consensus disorder prediction 202 250 - -
Glsi10g0554 310 MobiDBLite consensus disorder prediction 212 231 - -
Glsi10g0554 310 ProSiteProfiles Zinc finger PHD-type profile. 254 306 IPR019787 -
Glsi10g0554 310 Pfam Alfin 69 197 IPR021998 GO:0006355|GO:0042393
Glsi10g0554 310 SUPERFAMILY FYVE/PHD zinc finger 246 307 IPR011011 -
Glsi10g0554 310 FunFam PHD finger alfin-like protein 249 305 - -
Glsi10g0554 310 CDD PHD_AL_plant 256 306 IPR044104 -
Glsi10g0554 310 Pfam PHD-finger 257 306 IPR019787 -
Glsi10g0554 310 SMART PHD_3 256 304 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0554 Glsi-ChrGlsi10 3476144 3479729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0554 59 309 Alfin-like Transcription Factor Family AT3G42790 76.984 4.28e-125 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Glsi10g0554 Alfin 1.1e-69 No_clan