Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0550 ATGATACTTTCTTCTCATATCAATGTTCCCAAAATGACGGATAATAATTCAAAACCACCAGATTCACCCGAGAGTGATTTCACCAACCCGTATCCTTTTGAGCTATCTGAGTTCTTCAAGTTCGAAGATCATGAATGGCCAGATGATGATCCTGATCACTCATTAGTTTCTGAGCAAGTCCCGAACCAGGTCCATCAAGCCAATGAAGGAAGTAGCAGCCTCTTTCAGGGGTCTTTTGGCAGAGACATTAGCGGTGATCGCGAGAGGAATGTTAAAGATAGAGTTGCATTCAGAACAAAGTCAGAGATTGAGATACTCGATGATGGGTACAAGTGGAGGAAGTATGGGAAGAAGATGGTGAAGAACAGCCCCAACCCAAGGTGTTCAGTGGACGGGTGCCCAGTGAAAAAGAGAGTCGAGAGAGATAGGGAGGATCCAAGGCTCAGTACTGCTCATGTACTATTGACCTTTGAGGATTATGAAGATCAAATAGAGGAAAATGCGCAGCTTCTGCTCTATCCACAACAAAACTTTCTGGAGGGGGAAATGGTCTACTTGTCAGGAAAACGTAAAGTAGATAAAATAAGATGCCCCAATAATAGCAGCACAGATCAGGAAAAGCTTAGACTCATACTTGGCAGAGTGATTAGACCCACTTCGGCTACTATGAACAGAACATCCATACCTGGAACCCTGGATGGGCTGGTCTGTAGAATACTGCTTTTGCCTTTTGAACGCATGCATCAACTAATGCCATTGAAATTCAAATCTCTCAATAGAATGGACTTTGAAGGTAGAAACAACGAATGA 810 0.4321 MILSSHINVPKMTDNNSKPPDSPESDFTNPYPFELSEFFKFEDHEWPDDDPDHSLVSEQVPNQVHQANEGSSSLFQGSFGRDISGDRERNVKDRVAFRTKSEIEILDDGYKWRKYGKKMVKNSPNPRCSVDGCPVKKRVERDREDPRLSTAHVLLTFEDYEDQIEENAQLLLYPQQNFLEGEMVYLSGKRKVDKIRCPNNSSTDQEKLRLILGRVIRPTSATMNRTSIPGTLDGLVCRILLLPFERMHQLMPLKFKSLNRMDFEGRNNE 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0550 269 SMART WRKY_cls 106 154 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi10g0550 269 Gene3D WRKY domain 93 152 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi10g0550 269 Pfam WRKY DNA -binding domain 107 148 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi10g0550 269 SUPERFAMILY WRKY DNA-binding domain 98 149 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi10g0550 269 MobiDBLite consensus disorder prediction 1 29 - -
Glsi10g0550 269 ProSiteProfiles WRKY domain profile. 101 147 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi10g0550 269 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 30 147 IPR044810 GO:0003700
Glsi10g0550 269 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0550 Glsi-ChrGlsi10 3455806 3459535 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0550 94 158 WRKY Transcription Factor Family AT5G26170 71.014 4.29e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Glsi10g0550 WRKY 1.6e-12 CL0274