Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0543 ATGGAGGAGATGTCGTCCGCAGTTGCAGTGCCATTAAGAATAGGTAATTCGGTCTGTGATAACCCAAACATAGCTACCCACATGGATGTATCCAGGCTTAAGCTGATGGCAGATGCGGGTTCGTTAGTTAATTCTGTAAGTAGGGTTTCCACTGAGACGGTTGTGGACTCTAATGAGGATCATAATGGTGGTAATCTGGAGGATAAAGTTAGTATCACAGCAGTTACACCACCAAAACAGGATAGAGAAGGAGAAATTCCTTTTTTGGACATGATTTCTCAAAATAAGACCACCTTGATCGCTGGCACCCAAGTGTTAAACCCGGCAATCGAGGAGGATGATTCCTTATCATTGGAAGGCGATCAGATTATTGATGGCTCTTGTTCCCTTTCTGTGGTCAGTGAGAACAGCAGCGTATGTGGAGAGGAGTTCGTCGGTTTTGAGACTACCTCAAAAGTTGGAGCACAAAGTCCCATAGAAATTGAGAAGAGCATCTGCGGTGTCAATATTGTCGCAAGGGCTGCTGATTTGGGGGAAACTGTTGAGGCAGAAATTGTGAGTGAACCCCTTGCTGTGGCAGTAGGCCTTGAAGAAGAGAATGGAGTTAGATCTGGCCCAAAGTCCTCTGCAGTTGTTGTTCATCTACCTAGGGTGAGTGGAACAGTTGGTCGCAGTGTTTTTGAATTGGATTATGCCCCACTATGGGGATCTATATCTATGTGTGGGAGAAGACCTGAGATGGAAGATGCTGTTGCAACTGTACCTAGATTTTTGAAAATTCCCATTCAAATGCTAATCGGGGATCGGGTACTTGATGGATTGAGCGAGTGTTTCAGTCAGCAGATGGTTCATTTTTTTGGAGTCTATGATGGCCATGGTGGCTCTCAGGTGGCAAATTATTGTCGTGACCGTATTCATTTGGCTTTGGCTGAAGAAATAGAATTTGTTAAGGAAGGTCTGATTAGTGGAAGTATCAAGGATAATTGTCAAGATCAGTGGGAAAAGGCTTTCACCAATTGTTTTCTAAAGGTTGATGCTGAAATTGGAGGAAAAGCTGATTGTGAACCTATTGCCCCAGAAACTGTTGGTTCCACTGCTGTTGTTGCTATTATTTGTTCGTCCCATATCATAGTTGCAAACTGTGGTGATTCAAGAGCAGTTCTGTGCCGTGGCAAAGAACCCATGGCATTGTCAGTGGATCATAAACCAAATCGAGATGATGAATATGCAAGAATCGAAGCAGCTGGAGGCAAGGTGATACAATGGAATGGTCATCGTGTATTCGGTGTTCTTGCTATGTCAAGGTCTATTGGTGACAGATATTTGAAGCCATGGATTATTCCAGAACCAGAGATTACGTTTCTTCCACGTGCAAAAGATGATGACTGCCTCATTCTGGCCAGTGATGGTCTTTGGGACGTCATGACAAATGAAGAGGCATGTGAGCTTGCGCAGAGACGAATACTTCTCTGGCACAAGAAAAATGGCGTTGCATTACCCTCAGAAAGGGGAGAGCGAATTGATCCTGCCGCACAAGCAGCTGCAGAGTACCTATCAAACCGTGCTCTTCAGAAAGGAAGCAAAGATAATATAACTGTGGTCGTGGTGGATTTGAAAGCTCAAAGAAAATTTAAGAGCAAGACATGA 1647 0.4414 MEEMSSAVAVPLRIGNSVCDNPNIATHMDVSRLKLMADAGSLVNSVSRVSTETVVDSNEDHNGGNLEDKVSITAVTPPKQDREGEIPFLDMISQNKTTLIAGTQVLNPAIEEDDSLSLEGDQIIDGSCSLSVVSENSSVCGEEFVGFETTSKVGAQSPIEIEKSICGVNIVARAADLGETVEAEIVSEPLAVAVGLEEENGVRSGPKSSAVVVHLPRVSGTVGRSVFELDYAPLWGSISMCGRRPEMEDAVATVPRFLKIPIQMLIGDRVLDGLSECFSQQMVHFFGVYDGHGGSQVANYCRDRIHLALAEEIEFVKEGLISGSIKDNCQDQWEKAFTNCFLKVDAEIGGKADCEPIAPETVGSTAVVAIICSSHIIVANCGDSRAVLCRGKEPMALSVDHKPNRDDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEITFLPRAKDDDCLILASDGLWDVMTNEEACELAQRRILLWHKKNGVALPSERGERIDPAAQAAAEYLSNRALQKGSKDNITVVVVDLKAQRKFKSKT 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0543 548 FunFam Protein phosphatase 2C 16 222 548 - -
Glsi10g0543 548 SMART PP2C_4 224 536 IPR001932 -
Glsi10g0543 548 SUPERFAMILY PP2C-like 230 539 IPR036457 -
Glsi10g0543 548 ProSitePatterns PPM-type phosphatase domain signature. 285 293 IPR000222 GO:0043169
Glsi10g0543 548 PANTHER PROTEIN PHOSPHATASE 190 538 IPR015655 GO:0004722|GO:0006470
Glsi10g0543 548 CDD PP2Cc 239 538 IPR001932 -
Glsi10g0543 548 Gene3D - 221 548 IPR036457 -
Glsi10g0543 548 ProSiteProfiles PPM-type phosphatase domain profile. 234 538 IPR001932 -
Glsi10g0543 548 Pfam Protein phosphatase 2C 273 531 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0543 Glsi-ChrGlsi10 3395603 3398244 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0543 1 548 PP2C-type Phosphatase Gene Family AT1G17550 46.892 8.95e-164 474