LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi10g0542	ATGGATGCTCTAGAGGAGGAAGAGAAAGAAGAGGAGGTGTTAGGTTCCAGCTCGACACTGGAGAAGGTGGCCGCTGCCAAAAAGTTCATAGAAAATCACTATAGGGCCCAGATGAAGAATATCCAGGACCGGAAGGAGAGACGTTGGGTTTTAGAAAGGAAATTAGCTTCCTCAGCTGCGCCAAATGAGGAACGGATCAACCTCATCAAAGATTTAGAGCGAAAAGAGACAGAATTTATGAGATTAAAAAGGCACAAGATATGTGTTAATGATTTCGAGCTTTTGAACATTATTGGAAGGGGGGCCTTTGGGGAGGTTAGATTGTGTCGGGAGAAGAAATCTGGAAACATTTATGCCATGAAAAAGCTGAAGAAATCTGAAATGCTTAAGAGAGGCCAGGTGGAGCATGTTAGAGCTGAGAGAAACTTACTAGCTGAAGTTGCTAGTCATTGCATAGTGAAACTTTACTACTCGTTTCAGGATGCTGACTCCCTGTATTTAATTATGGAATATCTACCTGGGGGTGACATGATGACTCTGCTGATGAGGGAAGACACCTTGAGTGAAAGTGTTGCTAGATTTTACATTGCACAGAGTGTTCTGGCCATAGAATCCATTCATAAACACAATTACATTCACAGAGATATTAAACCCGATAATCTTCTTCTGGACAAAAATGGTCACATGAAGCTCTCGGATTTTGGCCTCTGTAAGCCTCTTGATTGTACTACCCTGTCTACACTGCACGAAAATCAGACCATGGCTGATGAAAATTTGGCAGAGCCGATGGATATTGATGGATGTTTTCCTGATGCGGACAATAGGAGCCGTTGGAGAAGTCCACGTGAACAACTTCAGCACTGGCAGATGAACAGGAGGAAGTTGGCATTTTCTACTGTGGGAACACCGGATTACATTGCTCCTGAAGTACTGCTGAAAAAAGGATATGGGATGGAATGTGATTGGTGGTCAATGGGAGCAATAATGTACGAAATGCTGGTTGGCTACCCTCCATTTTACTCAGACGATCCAATAACCACATGCAGAAAGATTGTTCATTGGAGAAATCATTTAAGATTTCCAGAAGATTCACAGTTGACGCTTGAGGCCAAGGATTTGGTCTGCAGATTGCTGTGTGATGTTGAACATAGATTAGGTACTCAAGGGGCATATGAAATCAAGGCTCATCCTTGGTTCAAGGGTGTGGAGTGGGATAAACTGTATGAAATGGAGGCAGCATTTAAGCCACAAGTCAATGGGGAGCTGGACACCCAAAACTTCATAAAGTTTGATGAAGTAGATCCACCAACAGTAGCACGAACTGGGTCAGGACCCTCACGAAAGATGCTATCGACGCCTAAAGATATAAATTTTGTTGGTTACACCTACAAGAACTTTGATGCTGTAAAAGGGCTTCGCCAGTTTGGTGAGTCCATGCAAGATTTTTCTTCTAAACGGGCAGCTGATGAAACAGGTTTACAATTGCTTGCGTCATCTGGAGACCCCATGTTACCATAA	1518	0.4315	MDALEEEEKEEEVLGSSSTLEKVAAAKKFIENHYRAQMKNIQDRKERRWVLERKLASSAAPNEERINLIKDLERKETEFMRLKRHKICVNDFELLNIIGRGAFGEVRLCREKKSGNIYAMKKLKKSEMLKRGQVEHVRAERNLLAEVASHCIVKLYYSFQDADSLYLIMEYLPGGDMMTLLMREDTLSESVARFYIAQSVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDCTTLSTLHENQTMADENLAEPMDIDGCFPDADNRSRWRSPREQLQHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGMECDWWSMGAIMYEMLVGYPPFYSDDPITTCRKIVHWRNHLRFPEDSQLTLEAKDLVCRLLCDVEHRLGTQGAYEIKAHPWFKGVEWDKLYEMEAAFKPQVNGELDTQNFIKFDEVDPPTVARTGSGPSRKMLSTPKDINFVGYTYKNFDAVKGLRQFGESMQDFSSKRAADETGLQLLASSGDPMLP	505

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi10g0542	505	FunFam	Non-specific serine/threonine protein kinase	53	175	-	-
	Glsi10g0542	505	Pfam	Protein kinase C terminal domain	418	463	IPR017892	GO:0004674\|GO:0005524\|GO:0006468
	Glsi10g0542	505	CDD	MobB_NDR_LATS-like	26	87	-	-
	Glsi10g0542	505	Gene3D	Phosphorylase Kinase; domain 1	83	177	-	-
	Glsi10g0542	505	ProSiteProfiles	Protein kinase domain profile.	92	399	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi10g0542	505	ProSitePatterns	Protein kinases ATP-binding region signature.	98	121	IPR017441	GO:0005524
	Glsi10g0542	505	PANTHER	SERINE/THREONINE-PROTEIN KINASE	11	431	-	-
	Glsi10g0542	505	FunFam	Non-specific serine/threonine protein kinase	176	243	-	-
	Glsi10g0542	505	SUPERFAMILY	Protein kinase-like (PK-like)	76	447	IPR011009	-
	Glsi10g0542	505	ProSiteProfiles	AGC-kinase C-terminal domain profile.	400	473	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Glsi10g0542	505	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	211	223	IPR008271	GO:0004672\|GO:0006468
	Glsi10g0542	505	SMART	serkin_6	92	399	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi10g0542	505	Pfam	Protein kinase domain	93	243	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi10g0542	505	Pfam	Protein kinase domain	291	399	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi10g0542	505	FunFam	Non-specific serine/threonine protein kinase	298	417	-	-
	Glsi10g0542	505	Gene3D	Transferase(Phosphotransferase) domain 1	178	416	-	-
	Glsi10g0542	505	SMART	pkinase_C_6	400	465	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Glsi10g0542	505	CDD	STKc_NDR_like	90	464	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi10g0542	Glsi-ChrGlsi10	3387168	3393023	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi10g0542	1	504	AGC Kinase Gene Family	AT4G33080	77.210	0.0	820

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_NDR	Glsi10g0542		Pkinase	8.6e-44	CL0016