Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0538 ATGACAGTGAAAAAGGCTGGACCTTTGGAACCGGCGACGAAAGGAAAGGTGGGGGTGAACACGACGCCCGGTCCGCTTGACATTGAGCTCTGGCCCAAAGCGGCCCCAAAGGCCATCAGGAACTTTGTGCAGTTCTGCCTTGAAGGCTATTACGATAACACCATCTTTCATCCTATCATCAAGGAATTTCTAGTCCAGGGTGGCGATGCGATCCCACCGGCACTGGCACAGTTGCTGGTGGCAGTGGAACTGGGCAGGTGTCTAATTGAACTTTGGTGTTTTTGTTTTGAAATCTTATCCTATAATTGGGACTTGGCAGACTTAAGCTGCAAGGATGAAAAAATTGTCCTTGAAGAAAAAGGGATAGGATCTGAAGCAAGAGCTGAACGAATGGCCAATGCAGATGGAGATTTACAATTGTTAAATGAAGCCGAGCGAGGGAGACCATTGCAGAAGCGGAAGAAACGAAGACTTCAAGGCGTGAAGATGAGTGATGACCCAAATGATTACGTTGTGCATGATCCTCTTTTGGAGAAGGGGAAAGACAAGTTCAACAGGGTGCAAGCTAAAATGAAGCAACGAGAACGAGAGTGGGCCAGAAAATCCCTCACTTCGTATTGCATGTATCAGCCTGGCAATGGCAATCTGCGATCTTGGCGAGATGTGAATTACTGTGCAAATCTAAGTCTCTGCCTCGAGTTCCCACCGAGAAGTAAGAATCTCATAGACGAACCTTCCCCGTTATGCCCTCATGCTTTGAATTTTGCCACTATTCTTTCTGTAATTATTTCCAGCAGTCGAGTTAGTTTGGGGGTAAAACCTGCCAAATTGTCCGGGAATATTTTGGGCCGGGTGCTGTGGGGCAATTCGAGAGGGGGATTAAAGTTATGCAGTGTGTATGCAGTATTGGGATTACAGCGCAGACCCGTGTTTTCCGTATCTCTGCAGCTTCGCGAAGAATTTTTGTGCAGTTGGCTGGTCATAATGGAACCAGGCCAACTTCGTGGAATTCCAAATATTTCGACAGTGATCGGTGTAGGAGACGACTCTGACCTTGGAGCCATGAGCCATGTATTTTCCTCCTCATTCTTTGGTTAA 1098 0.4709 MTVKKAGPLEPATKGKVGVNTTPGPLDIELWPKAAPKAIRNFVQFCLEGYYDNTIFHPIIKEFLVQGGDAIPPALAQLLVAVELGRCLIELWCFCFEILSYNWDLADLSCKDEKIVLEEKGIGSEARAERMANADGDLQLLNEAERGRPLQKRKKRRLQGVKMSDDPNDYVVHDPLLEKGKDKFNRVQAKMKQREREWARKSLTSYCMYQPGNGNLRSWRDVNYCANLSLCLEFPPRSKNLIDEPSPLCPHALNFATILSVIISSSRVSLGVKPAKLSGNILGRVLWGNSRGGLKLCSVYAVLGLQRRPVFSVSLQLREEFLCSWLVIMEPGQLRGIPNISTVIGVGDDSDLGAMSHVFSSSFFG 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0538 365 Gene3D - 2 77 IPR029000 -
Glsi10g0538 365 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 12 69 IPR044666 -
Glsi10g0538 365 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 24 189 IPR002130 GO:0000413|GO:0003755
Glsi10g0538 365 Coils Coil 177 197 - -
Glsi10g0538 365 SUPERFAMILY Cyclophilin-like 11 73 IPR029000 -
Glsi10g0538 365 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 19 69 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0538 Glsi-ChrGlsi10 3371311 3377054 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0538 11 69 U-box Gene Family AT5G67530 47.458 5.34e-11 62.0