Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0531 ATGTTTTCCCTTTTTGCAGTGATGGCTAGCTTGGCACCCGAAGGATCACAATATGATGCCCGTCAATATGATGCTAAGATGAACGAATTACTTGGAGTTGAGGGGCAAGAGTTCTTTACTTCTTATGACGAAGTTCATGAAAGCTTTGATGCTATGGGATTGCAAGAGAATCTTCTGAGGGGCATTTATGCATATGGTTTCGAGAAGCCCTCTGCAATTCAGCAAAGAGGGATTGTTCCTTTCTGCAAGGGACTCGATGTAATTCAGCAAGCACAATCTGGAACTGGAAAAACTGCTACTTTTTGTTCTGGAATTTTGCAGCAGCTTGATTACAGCTTAGTTGAATGCCAGGCACTGGTTCTAGCTCCCACTCGTGAGCTTGCACAACAAATTGAGAAGGTCATGCGGGCACTAGGAGACTATCTTGGTGTCAAGGTTCATGCTTGTGTGGGTGGCACCAGTGTTCGAGAAGATCAACGTATCCTCTCAAGTGGGGTTCAAGTTGTTGTTGGAACCCCTGGTCGTGTGTTTGACATGCTGCGGAGACAATCCCTTCGCCCTGATTACATTCGAATGTTTGTGTTGGATGAGGCAGACGAGATGCTTTCTCGGGGTTTCAAGGATCAGATCTATGATATTTTTCAGCTGCTGCCTCCAAAAATTCAGGTTGGGGTTTTCTCTGCCACAATGCCGCCTGAAGCACTGGAGATCACAAGGAAGTTCATGAATAAACCTGTGAGGATCTTAGTGAAACGCGATGAGCTTACTTTGGAAGGGATCAAGCAATTTCATGTCAATGTTGAGAAGGAGGAATGGAAACTGGAGACACTTTGTGATCTTTACGAGACATTGGCAATTACCCAGAGTGTGATCTTTGTGAACACGAGACGGAAGGTAGATTGGCTGACAGACAAAATGCGGGGTCGTGATCACACGGTTTCAGCTACACATGGAGATATGGACCAAAACACAAGGGATATCATCATGAGGGAATTCCGTTCTGGATCTTCGCGTGTTTTAATCACCACGGATCTGTTGGCCCGAGGTATTGATGTCCAGCAGGTCTCACTCGTGATTAATTATGATCTGCCAACCCAGCCAGAGAACTATCTGCATCGAATTGGTCGTAGTGGTCGGTTTGGGAGGAAGGGTGTTGCTATAAATTTTGTGACCAGGGATGACGATAGGATGCTGTTCGATATCCAAAAGTTTTATAATGTGGTGATTGAAGAGCTGCCAGCCAATGTTGCTGATCTTCTTTGA 1263 0.4537 MFSLFAVMASLAPEGSQYDARQYDAKMNELLGVEGQEFFTSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVQVVVGTPGRVFDMLRRQSLRPDYIRMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDDRMLFDIQKFYNVVIEELPANVADLL 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0531 420 FunFam Eukaryotic initiation factor 4A-III 255 420 - -
Glsi10g0531 420 CDD SF2_C_DEAD 260 390 - -
Glsi10g0531 420 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 194 202 IPR000629 -
Glsi10g0531 420 CDD DEADc_EIF4A 51 249 - -
Glsi10g0531 420 PANTHER RNA HELICASE 37 404 - -
Glsi10g0531 420 Gene3D - 256 420 IPR027417 -
Glsi10g0531 420 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 47 75 IPR014014 GO:0003724
Glsi10g0531 420 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 78 248 IPR014001 -
Glsi10g0531 420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 401 IPR027417 -
Glsi10g0531 420 FunFam Eukaryotic initiation factor 4A-II 35 254 - -
Glsi10g0531 420 SMART ultradead3 66 263 IPR014001 -
Glsi10g0531 420 Gene3D - 37 255 IPR027417 -
Glsi10g0531 420 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 259 420 IPR001650 -
Glsi10g0531 420 SMART helicmild6 300 381 IPR001650 -
Glsi10g0531 420 Pfam Helicase conserved C-terminal domain 273 381 IPR001650 -
Glsi10g0531 420 Pfam DEAD/DEAH box helicase 72 233 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0531 Glsi-ChrGlsi10 3324687 3327068 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0531 8 420 Eukaryotic Initiation Factors Gene Family AT1G72730 88.406 0.0 763