Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0521 ATGGAAGGACTGCACGAGGTGGGTCCACCTCCATTTCTTACCAAGACCTTTGAAATGGTGGAAGACCCATCCACAGACTCCATTGTTTCGTGGAGCACATCTCGTAATAGCTTCATCGTGTGGGACTTTGACAAATTCTCGACCAACCTTCTTCCTCGGTACTTCAAGCACAGCAATTTCTCCAGCTTCGTTCGCCAGCTCAACACCTATGGTTTCAGAAAAGTTGATCCTGATCGATGGGAATTCGCAAACGAAGGGTTTTTGGGAGGACAGAGGCAGCTATTGAAGACCATAAAGAGAAGAAGAAATGTGTCGCAGAGCATACAACAACATGGAGGAGGTGCTTGTGTTGAATTGGGGCAGTATGGGTTGGAAGACGAGCTCGATAGGTTGAGGAGAGATAGAACCGTGTTATTGGCAGAAATTGTAAAGGTGAGGCAACAACAGCAAAACTCAAGGGAGCAATTGAAGGGTGTGGAAGCCAGATTAAAGAAGACAGAGAAGAAACAGCAACAGATACTGACTTTCCTCGCCAAAGCACTAAACAACCCATCTTTTATGCAACAGTTTTCCCAGAACAGACGAGTACAGGGTGTTGAGATTAGACGAAAGCGGAGACTAACTGTGAGCCCAAGTGTGGAGAATTTGCTAGATGATCCTGTGCCTGGTGAACCAGTGGCGGACTATCCAAGCTTTGAACAAGAACTAGAGTTGGCAACTATGGAGTCTGAGATGGAGACCCTTTTGGCAACTGCTTACGGTAATGAATTAAGCAGTGAAATCAAAGACCCAATTTCAAGTTTAGATCTAACAGCTAATGGAAGCAAATTGGGTTCAGGGAGTGAGGCAGTGTGGGAGGACTTGCTGAACGAAGACTTGGTTGCTGGGAATCCAGAGGAGGAAGTTGTAGTCGGTGATTATTGCCAAATTGGTGTGGCTGGAGAGGATTTGGTAGAGAAGGCAGATGAGTGGGGTGAGGGGTTGGAGGAGCTTGTGGATGAATTGGGTTTCCTGGGGTCCAAGCCAAGTGATTGTTTTTAG 1041 0.4659 MEGLHEVGPPPFLTKTFEMVEDPSTDSIVSWSTSRNSFIVWDFDKFSTNLLPRYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLGGQRQLLKTIKRRRNVSQSIQQHGGGACVELGQYGLEDELDRLRRDRTVLLAEIVKVRQQQQNSREQLKGVEARLKKTEKKQQQILTFLAKALNNPSFMQQFSQNRRVQGVEIRRKRRLTVSPSVENLLDDPVPGEPVADYPSFEQELELATMESEMETLLATAYGNELSSEIKDPISSLDLTANGSKLGSGSEAVWEDLLNEDLVAGNPEEEVVVGDYCQIGVAGEDLVEKADEWGEGLEELVDELGFLGSKPSDCF 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0521 346 Pfam HSF-type DNA-binding 12 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi10g0521 346 FunFam Heat shock transcription factor 1 5 102 - -
Glsi10g0521 346 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi10g0521 346 PRINTS Heat shock factor (HSF) domain signature 12 35 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi10g0521 346 PRINTS Heat shock factor (HSF) domain signature 50 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi10g0521 346 ProSitePatterns HSF-type DNA-binding domain signature. 51 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi10g0521 346 Gene3D - 5 102 IPR036388 -
Glsi10g0521 346 Coils Coil 128 169 - -
Glsi10g0521 346 SUPERFAMILY "Winged helix" DNA-binding domain 8 101 IPR036390 -
Glsi10g0521 346 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 214 IPR027725 -
Glsi10g0521 346 SMART hsfneu3 8 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0521 Glsi-ChrGlsi10 3291364 3292843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0521 1 342 HSF AT2G26150 51.275 9.04e-114 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Glsi10g0521 HSF_DNA-bind 1.8e-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0521 10 3291364 3292843 Glsi08g1742 08 12414761 12416566 CCT