Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0517 ATGATGAAAGGTTTGGTGGTAGATGAAAACATGTCCAATTTGACATCTGCATCCAGTGAAATAAGTGCTTCTTCTGGGACTAGGAATGACACTGCCCATGCCTCTCTCTACCCTCAGCACTCCTCGACTTCAACAAATCAGGAACCACAACCCAAAAAGAAGAGAAATCTTCCCGGCAACCCAGACCCAGAAGCTGAAGTAATAGCCTTGTCTCCCAAGAGCCTCTTGGCAACAAATCGATTCATTTGCGAGATATGTAACAAAGGGTTTCAAAGAGATCAGAATCTGCAGCTTCATAGAAGAGGGCATAATTTGCCATGGAAGCTAAAGCAAAGAAGCAACAAAGAGATAAGAAAGAAGGTGTATGTGTGCCCAGAGACCACATGTGTTCACCATGACCCATCAAGGGCCCTCGGGGACCTCACTGGGATCAAGAAGCACTTCTGCAGGAAGCATGGCGAGAAGAAATGGAAGTGTGACAAGTGCTCCAAGCGTTACGCAGTTCAGTCCGATTGGAAAGCTCACTCTAAAATTTGTGGCACCAAAGAGTACAAATGTGATTGTGGAACCCTTTTCTCTAGAAGGGACAGTTTCGTCACTCACAGAGCCTTCTGTGATGCGTTAGCACAGGAGAATGGCAGAGCAATCACAGCAGCGAACCCTCTACTCTCGTCGCAGACCCAACTACAATATAATCTGCCAGTTAAAAAAGAGATTCCACCATGGTTGGCTTGCCCACCAGTGGGAGAAGCTGCAAGTGCTCTCAGGCCTTTAGGTTTGTCCTCATCATTACTCCCAGGCCCAGCACATTTCGACCAATCCTTGATCCACAATGAAAACCCTCACCCCACAACTTCCCTTCCTTCTTCTTATATGTCGGCCTCTGCTTTGTTGCAAAAAGCATCACAAATAGGTGTGACAGCGAACAAATTTAGACCCCACCAGCAGATTCACATGCCTGAATGTACTACAGGGTACGCCTCCTCATCAATGCCGCCTTCATCATCTTCACGTGACCAAATGGGGACTGGCTTTGCTCATGCCTTGGCATCTTATGGGAATAAAGCTGGAATCACCTCCGACTACTTGGAAGAAGGATCCCCTCTTTTCCATGATATCTCCGCTACTGGATTTGAGGATGCTCTCAGGGGAATGTTGAATCCTACAAGCGACCGTAACTTTCAGGAACTTGCTGTTTCAAAGTCATCAGAATCTCAATTTACTAAAACCAACGCTGGGGGTGCCAGTGATGAATTGACCAGAGATTTTCTGGGTCTCAAAGCATTTTCTCAGACACATTTCTTCAATATATCCGGTCTCGATCATTTGGGTTCTTCATCATATGGCAAGCAGAATCAGAACCAAACACCTTGGCAAGGTTAA 1383 0.462 MMKGLVVDENMSNLTSASSEISASSGTRNDTAHASLYPQHSSTSTNQEPQPKKKRNLPGNPDPEAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEIRKKVYVCPETTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKICGTKEYKCDCGTLFSRRDSFVTHRAFCDALAQENGRAITAANPLLSSQTQLQYNLPVKKEIPPWLACPPVGEAASALRPLGLSSSLLPGPAHFDQSLIHNENPHPTTSLPSSYMSASALLQKASQIGVTANKFRPHQQIHMPECTTGYASSSMPPSSSSRDQMGTGFAHALASYGNKAGITSDYLEEGSPLFHDISATGFEDALRGMLNPTSDRNFQELAVSKSSESQFTKTNAGGASDELTRDFLGLKAFSQTHFFNISGLDHLGSSSYGKQNQNQTPWQG 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0517 460 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Glsi10g0517 460 Pfam Zinc-finger double-stranded RNA-binding 81 103 IPR022755 -
Glsi10g0517 460 MobiDBLite consensus disorder prediction 1 65 - -
Glsi10g0517 460 SUPERFAMILY beta-beta-alpha zinc fingers 80 177 IPR036236 -
Glsi10g0517 460 SMART c2h2final6 122 152 IPR013087 -
Glsi10g0517 460 SMART c2h2final6 81 103 IPR013087 -
Glsi10g0517 460 SMART c2h2final6 157 177 IPR013087 -
Glsi10g0517 460 Gene3D Classic Zinc Finger 61 131 - -
Glsi10g0517 460 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 34 433 IPR031140 -
Glsi10g0517 460 MobiDBLite consensus disorder prediction 9 53 - -
Glsi10g0517 460 FunFam protein indeterminate-domain 5, chloroplastic-like 135 214 - -
Glsi10g0517 460 Gene3D Classic Zinc Finger 135 213 - -
Glsi10g0517 460 FunFam protein indeterminate-domain 12-like 60 128 - -
Glsi10g0517 460 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 103 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0517 Glsi-ChrGlsi10 3268693 3270510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0517 7 307 IDZ Gene Family AT1G55110 58.631 7.05e-122 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi10g0517 zf-C2H2_jaz 6.6e-05 CL0361