Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0507 ATGACTCCTGTTTCTTTCCACCCACCAAGTCCTTCTCTCCCTCTCGTTAATCAAATAGAAGATCGAGACCAAATCTTCATTTCTCCTAATAATATGGATTCGAATTCTCTTTCATGTCCTAGTTTCTTCGACATACTTGATCAACAGACTAGAGATATCCGAGAGTTAAGACATGATCAAAAGGATGGTGAACTGGTATTGTATGGTGCATCAAGCAGTCACCAAGTTTGCAATTCATCCTTCATTTCACCCCAGCCAGCAGGCACGGTGGGTGGCCACAACTTACCTTTCTATAAAATGGGGGAGGCAGGAAGCAAAAGCGGGTACGGGTCTGCAAAATGGATGTCTTCTAAGATGAGGTTGATGCTAAAAACGATGACTCCTAGTAGTCCTCCTGTCACTGATAAAGTATCCTTTCAAAATCAAGAGCACGAAAACAGTCAAACAAGTTCTTCTGTTTTTAACAACAGAAATAGCACCACTAGGGTTTGTGCGGATTGTAACACAACTAGTACCCCACTTTGGAGGAGTGGCCCTGAGGGACCTAAGTCACTTTGCAATGCCTGTGGCATTAGGCAGAGGAAGGCAAGAAGGGCTGCTGCAGCTGCAAATGGTGAAGTCACTTCCATGGATACAAAGACGACCAGAGTGCATAACAAGCAAAAGAAGCTACGCACAAACCATTTTGTACAATTCAAGAATAAGTGGAAGGGCTCATCTCAGGCAGAAAGAAAGATTCCTTTCAAGGATTTCGCATGGAACTCCGCTCTTCACCACCAAGTGTTTCCACGGGATGAAGTTGCTGAGGCCGCGCTGCTTCTCATGGATTTATCTTGTGGCTTTCTTCATATTTAG 855 0.4421 MTPVSFHPPSPSLPLVNQIEDRDQIFISPNNMDSNSLSCPSFFDILDQQTRDIRELRHDQKDGELVLYGASSSHQVCNSSFISPQPAGTVGGHNLPFYKMGEAGSKSGYGSAKWMSSKMRLMLKTMTPSSPPVTDKVSFQNQEHENSQTSSSVFNNRNSTTRVCADCNTTSTPLWRSGPEGPKSLCNACGIRQRKARRAAAAANGEVTSMDTKTTRVHNKQKKLRTNHFVQFKNKWKGSSQAERKIPFKDFAWNSALHHQVFPRDEVAEAALLLMDLSCGFLHI 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0507 284 SMART GATA_3 158 209 IPR000679 GO:0006355|GO:0043565
Glsi10g0507 284 Pfam GATA zinc finger 164 197 IPR000679 GO:0006355|GO:0043565
Glsi10g0507 284 CDD ZnF_GATA 163 191 IPR000679 GO:0006355|GO:0043565
Glsi10g0507 284 ProSitePatterns GATA-type zinc finger domain. 164 189 IPR000679 GO:0006355|GO:0043565
Glsi10g0507 284 Gene3D - 158 229 IPR013088 GO:0006355|GO:0008270
Glsi10g0507 284 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 283 - -
Glsi10g0507 284 MobiDBLite consensus disorder prediction 126 154 - -
Glsi10g0507 284 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 158 197 - -
Glsi10g0507 284 ProSiteProfiles GATA-type zinc finger domain profile. 158 194 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0507 Glsi-ChrGlsi10 3230441 3231937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0507 107 283 C2C2-Gata Transcription Factor Family AT4G26150 37.788 1.66e-24 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi10g0507 GATA 5.5e-17 CL0167