Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0505 ATGTCCAAAATGAAGCATCTACTGAGAAAGCTTCACATCGGTGGTGGCATCAATGAACCCCACAGATTGCCTGATACCCGCCCAGTGCTCACCCCCACCCCCAATCTCACTTCATCTTCTTCCACCATGGCCTCGAATACAATGGGGTCAATCCCGCCCAATGAATCCGTTGCTGATCGGACCGATATTGATGGTAGTGGTGGTATTTGTGGCGACAGGGGAGCCGATTTTAGTCTTTTGGAGGAGGAGTTTCAGATGCAGTTAGCTTTAGCCATTAGCGCTTCCGATCCAGGTGTGCGCAAGGACCCCGAGTCTGCTCAGATCGACGCCGCGAAGCAGATGAGCCTCGGGTGTGCAGCTTCCGTCACCAACACGGAAGCCCTCGTCCAGTTTCAATCGCTTCGTTATTGGAACTATAATGTCATTGATTATGAAGAGAAAGTGATGGATGGATTTTATGATGTATATGGCTTCACCTCAAATTTCACTGAACGAGGAAAGATGCCATTGTTGGTAGATTTGCAATCTTCTTCCATCTCAGAAAATGTTGGTTGTGAAGTGATTTTGGTGAATCGCATAGTTGATTTTGAGCTGAAGCAGCTTGAGAAAAAAGCTTGTACTTTATCCAAAAACTGTTGCATTTCAGAACAAGGACTAGTTTTAAGTGGCTTGCTTCAGACACTTGCTGATATTGTTGTCAATAGACTGGGTGGGCCTGTTGGTGATCCTGATGAAATATTGAAAAGGTGGACCATGAGGAGTCATGAGTTACGTAATTCTTTGAGGACAGTTGTTATTCCCCTTGGCTGTCTTGATGTTGGACTTTCACGTCATCGAGCCCTACTTTTTAAGGTGATGGCTGATAGGGTTAATGTTCCCTGCATGCTGGTCAAGGGGAGCTATTACACTGGAACTGATGATGGAGCTGTGAATTTGATTAAAGCTGACGATGGCAGTGAATACATTATTGATTTGATGGGTGCCCCTGGCGCTCTTATTCCTGCTGAAGTACCCAGTAATCAGCTCCAAAACTACAGTCTTGCTGTAAGGGGTTGTGAAGAGATTGCAGAACTACCTAACAACACACATTTGATGCTTGATGATGGAACAGGGATGCTGGCAGTTTCATCTGATCTTGATAGAAATTTAACAGTGGGCAGGGTTCACTCAGAAGAATTATTAAATGTGCCCAGTCAAGCAAAACTAGATGAAAAGAACGAAAGCGGAATAAATCAAGCAGAGAGTTTTGGACATGATTTGGGGAATCTTCTTCGGTCTTTACATATATCATCCGAGAGTACATCTCAAACAGAAGCATCATCTGCAGAAAAGATGCAAGTAAAAAATGTCTCCAAGTATGTCCTTAGTGCCGCAAAGAACCCAGAATTTGCTCAAAAACTACATGCTGTTCTATTAGAGAGTGGTGCATTACCTCCTCCTGATCTCTTTTCTGATATCAATCAACAAGGTACAGGTGAAGATAAATTTAATGAACAAATTCATCAACTTAATGAAAAAATTGTCAATGATACTGCTCAATCTGATCCAGAAAAGTTGTTATTAAGATATGAGAACTCTCTTGTACCCTCTCAAGGGGTGAGCTCCTCCAGTGATGTCAGATTCTATCAATCTGCTAATTGGTTAGCTGAACAGAAAGAAGAACCAGAGCAAATTGATGCCATGGTTGTAGATAGAGTTCCTGTCATTCCACTTAAGATGTATGAAGAAAAAGTTCTTGAGTCTTCCTTGACCAAGGCAGTTGTTTCTTGCAAAAGACAAATTGGGGTTGACATTGTCTATGATGATGAAAATGGTCATAATAATAAGGTTTTAGCAGCTTTGAATTACAATGAATTTGGGAAAGATTCTGCCATTCAATTTAATGAAATGGCTAATAGAGATTGCATCCTAAATGATGGTAAAAGCCAGAAAGTTAATTCAGTACTGGGGGAGGTCACAGAATGGGAAATTCAATGGGAGGATCTTTGTATTGGTGAGCGTATCGGTATAGGTTCTTATGGTGAGGTTTACCATGCTGACTTGAAAGGCACTGAAGTTGCTGTGAAGAAGTTTCTGAACCAAGACTTTTCTGGAGATGCATTGGCTCAGTTCAAATCTGAAGTTGAGATCATGTTGAGGCTTCGGCATCCTAATGTTGTGCTTTTCATGGGAGCTATTACTTGTTCCCCACATTTTTCAATCTTGACGGAGTTTCTTCCAAGAGGGAGTTTGTATAGGCTATTGCATCGTCCCAATTTTCAACTTGATGAGAAGAGGCGGTTGCGAATGGCTCTTGATGTGGCTAAGGGAATGAATTACTTGCACACGAGCCATCCTCCCATTGTCCATCGAGATTTAAAGTCTGCAAATCTTCTTGTCGACAAACATTGGGTGGTTAAGGTATGTGATTTTGGTTTGTCACGCATGAAGCATCATACTTTTCTGTCTTCGAAATCTTCTGCTGGAACGCCCGAGTGGATGGCTCCGGAAGTATTAAGAAATGAACCAGCCAATGAGAAGTGTGATGTGTATAGTTTTGGTGTGATTTTGTGGGAGTTGGCAACTGCAAAGATCCCATGGAAAGGGTTGAACCCAATGCAGGTTGTTGGGGCAGTTGGATTCCAAAATAGACGGCTTGAAATTCCAGAAGATGTTGATCCAACGGTCGCCCAAATAATACGTGACTGTTGGCAAATGGAGCCGCATTTGCGACCATCATTTTCACAGCTAATGTCTCGACTCCGCAGTCTTCAACATCTGGTTGTTGGAAATACGAGCTCAAGGCATTAG 2790 0.4258 MSKMKHLLRKLHIGGGINEPHRLPDTRPVLTPTPNLTSSSSTMASNTMGSIPPNESVADRTDIDGSGGICGDRGADFSLLEEEFQMQLALAISASDPGVRKDPESAQIDAAKQMSLGCAASVTNTEALVQFQSLRYWNYNVIDYEEKVMDGFYDVYGFTSNFTERGKMPLLVDLQSSSISENVGCEVILVNRIVDFELKQLEKKACTLSKNCCISEQGLVLSGLLQTLADIVVNRLGGPVGDPDEILKRWTMRSHELRNSLRTVVIPLGCLDVGLSRHRALLFKVMADRVNVPCMLVKGSYYTGTDDGAVNLIKADDGSEYIIDLMGAPGALIPAEVPSNQLQNYSLAVRGCEEIAELPNNTHLMLDDGTGMLAVSSDLDRNLTVGRVHSEELLNVPSQAKLDEKNESGINQAESFGHDLGNLLRSLHISSESTSQTEASSAEKMQVKNVSKYVLSAAKNPEFAQKLHAVLLESGALPPPDLFSDINQQGTGEDKFNEQIHQLNEKIVNDTAQSDPEKLLLRYENSLVPSQGVSSSSDVRFYQSANWLAEQKEEPEQIDAMVVDRVPVIPLKMYEEKVLESSLTKAVVSCKRQIGVDIVYDDENGHNNKVLAALNYNEFGKDSAIQFNEMANRDCILNDGKSQKVNSVLGEVTEWEIQWEDLCIGERIGIGSYGEVYHADLKGTEVAVKKFLNQDFSGDALAQFKSEVEIMLRLRHPNVVLFMGAITCSPHFSILTEFLPRGSLYRLLHRPNFQLDEKRRLRMALDVAKGMNYLHTSHPPIVHRDLKSANLLVDKHWVVKVCDFGLSRMKHHTFLSSKSSAGTPEWMAPEVLRNEPANEKCDVYSFGVILWELATAKIPWKGLNPMQVVGAVGFQNRRLEIPEDVDPTVAQIIRDCWQMEPHLRPSFSQLMSRLRSLQHLVVGNTSSRH 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0505 929 MobiDBLite consensus disorder prediction 30 54 - -
Glsi10g0505 929 FunFam Serine/threonine-protein kinase CTR1 741 924 - -
Glsi10g0505 929 Gene3D Transferase(Phosphotransferase) domain 1 741 924 - -
Glsi10g0505 929 SMART serkin_6 662 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0505 929 Pfam Ethylene-responsive protein kinase Le-CTR1 130 333 - -
Glsi10g0505 929 PRINTS Tyrosine kinase catalytic domain signature 822 832 IPR001245 GO:0004672|GO:0006468
Glsi10g0505 929 PRINTS Tyrosine kinase catalytic domain signature 736 749 IPR001245 GO:0004672|GO:0006468
Glsi10g0505 929 PRINTS Tyrosine kinase catalytic domain signature 775 793 IPR001245 GO:0004672|GO:0006468
Glsi10g0505 929 PRINTS Tyrosine kinase catalytic domain signature 885 907 IPR001245 GO:0004672|GO:0006468
Glsi10g0505 929 PRINTS Tyrosine kinase catalytic domain signature 841 863 IPR001245 GO:0004672|GO:0006468
Glsi10g0505 929 ProSitePatterns Serine/Threonine protein kinases active-site signature. 781 793 IPR008271 GO:0004672|GO:0006468
Glsi10g0505 929 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 127 920 - -
Glsi10g0505 929 Gene3D Phosphorylase Kinase; domain 1 655 739 - -
Glsi10g0505 929 ProSiteProfiles Protein kinase domain profile. 662 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0505 929 FunFam Serine/threonine-protein kinase isoform 1 653 740 - -
Glsi10g0505 929 Pfam Protein tyrosine and serine/threonine kinase 664 914 IPR001245 GO:0004672|GO:0006468
Glsi10g0505 929 ProSitePatterns Protein kinases ATP-binding region signature. 668 690 IPR017441 GO:0005524
Glsi10g0505 929 MobiDBLite consensus disorder prediction 13 65 - -
Glsi10g0505 929 SUPERFAMILY Protein kinase-like (PK-like) 649 913 IPR011009 -
Glsi10g0505 929 CDD STKc_MAP3K-like 668 914 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0505 Glsi-ChrGlsi10 3213245 3221321 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0505 1 927 MAP Kinase Kinase Kinase AT5G11850 55.521 0.0 966
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Glsi10g0505 PK_Tyr_Ser-Thr 1.4e-65 CL0016