Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0496 ATGTTTCTGAGAACACCTGCCATGAACAGGAGTTTGAACAGAGAGAATCCAGATATTTTGATTATGATGATTGCAGAGAAGCAGATAATAGGAGGTGGTGAGGAGGACAAAAACATATCAGAGAGAGAGGGAAGAGATGGGCCCGTTATTATGCCGATGGAGAATGATATGTACAGTGCTCCAATGGACATTGCTGGCCGAAGTTCTGCTCTCATAGATGAAATTCCACAACATTTGACACCAAATCCACTCATTCAATACCATTCATTTGACCTTAATGACCAAACCCGTGTCGTAAATGGGATTTCATTGCTTTCTGGAATGCAGAGTGAACTTACAAGTAATATCCATACGGATTTTCCCAATATAAATCCTGCATGCATTGCTGATTCTATTTCCTTAGTTACATCACAAGGAAAGAATATTGTGGGGGATGCCTCTCTTGGAACTTCGTGTCCCGTAAACAACAGTGAGTTTCGAGAGCATTTAGCTGGAGGAACGACAATTACTCCGGCTTCACTTGCTGCTAGAATCGGTCTTCAAGAAAATTTAGAGAAATCACCAGCTTTATCTCCTTCATTCTGTTCATTGGAGGCTTTGGGACCATATATCTTAAATAATTGGCAGGATACTTCAAACCCTCTGCTTGCAACTTTTGGGGATCGTAGCTACGATGAAGTGCCTGGTAACGGTAAGTGGAATGTCAACAAGTTTGACCAAGCTCCAGAGCTTGATGGAACCAGTTTCCAGCCTTATTCATGCATGGCAAACCTGGATTCAAATGGATGGACATCATCAAATGCTCATGCTTATGGTTCGTCTAATTTTAGCAATGAGCTCTCATTAAGTCTTGCAACATCTCCAACCACAGGTCAGTGCTCGGAGGTGAGTTGTTCAGATGGGACCCATTGCTTGAATGGAACAAGGTCAGGCTTGGAACAAAGCTCCTGCAGCAGTAGGGAGTTTTCTAGGAGTTATGGTTCCAATAGACATTTGCATTATTTTTCACAAGCAATATTGGGGTCGAGATATCTTACTGGAATTCAAGAAATACTTGCTCAAATTGCAAGATATTCTCTTGAAAATCTAGAAGTGATAAATTGTCCAGCTGTTGGTAGTAGAGCAGAAGGAAATATTTCAACATCAGCTTTCCCGGTGATAGCGATAAATCACAATGCAAATTCTATGTTTGAAGCACATGTGGAACCTTCATTGGAAAGACATGCAGCTGAATCGAAGAAGTCCCACCTTCTGACACTTCTACAACTGGTGGACAGTCGATATAATCAGTGCCTGGATGAGGTACATACTGTTGTATCTGCATTTCATGCTGCTACGGAGTTGGATCCTCACGTGCATGCACATTTTGCTCTTCAAACAATCTCTTTCTTATACAAGGATCTGCGAGATAGGATTAGCAATTATATTCTTGCCATGGGAGCAACTTTTAACAACTCATGTTCAGAAGAAACTTCATTCATCCGAAAGCAATGGGCTCTCCAACAGTTGAAGAGAAAAGATCATCAGCTGTGGAGGCCCCAAAGGGGCTTGCCTGAAAGATCTGTCTCTGTTCTACGGGCTTGGATGTTTCAGAATTTCCTACATCCATATCCTAAAGATGCAGAGAAGCATTTGCTTGCAGTAAAAAGTGGGTTGACAAGAAGCCAGGTATCCAACTGGTTTATAAATGCTCGTGTACGGCTATGGAAACCTTTGATTGAGGAAATGTATGCTGACATAAATAAAAGAAAGACTCTTCGAAATGAAGAAGGAACGGAGAGCAGCCATAGAAACAGCTGGATAAGCGTGAGCAACCGAAGATTTAGTATCAACTGA 1836 0.4172 MFLRTPAMNRSLNRENPDILIMMIAEKQIIGGGEEDKNISEREGRDGPVIMPMENDMYSAPMDIAGRSSALIDEIPQHLTPNPLIQYHSFDLNDQTRVVNGISLLSGMQSELTSNIHTDFPNINPACIADSISLVTSQGKNIVGDASLGTSCPVNNSEFREHLAGGTTITPASLAARIGLQENLEKSPALSPSFCSLEALGPYILNNWQDTSNPLLATFGDRSYDEVPGNGKWNVNKFDQAPELDGTSFQPYSCMANLDSNGWTSSNAHAYGSSNFSNELSLSLATSPTTGQCSEVSCSDGTHCLNGTRSGLEQSSCSSREFSRSYGSNRHLHYFSQAILGSRYLTGIQEILAQIARYSLENLEVINCPAVGSRAEGNISTSAFPVIAINHNANSMFEAHVEPSLERHAAESKKSHLLTLLQLVDSRYNQCLDEVHTVVSAFHAATELDPHVHAHFALQTISFLYKDLRDRISNYILAMGATFNNSCSEETSFIRKQWALQQLKRKDHQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPLIEEMYADINKRKTLRNEEGTESSHRNSWISVSNRRFSIN 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0496 611 CDD homeodomain 511 571 IPR001356 GO:0003677
Glsi10g0496 611 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 271 590 - -
Glsi10g0496 611 Gene3D - 514 593 - -
Glsi10g0496 611 SUPERFAMILY Homeodomain-like 513 579 IPR009057 -
Glsi10g0496 611 SMART HOX_1 511 575 IPR001356 GO:0003677
Glsi10g0496 611 ProSiteProfiles 'Homeobox' domain profile. 508 571 IPR001356 GO:0003677
Glsi10g0496 611 Pfam Homeobox KN domain 528 567 IPR008422 GO:0003677|GO:0006355
Glsi10g0496 611 SMART prehox3 333 474 IPR006563 -
Glsi10g0496 611 Pfam Associated with HOX 339 473 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0496 Glsi-ChrGlsi10 3174446 3177785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0496 278 584 Homeobox Transcription Factor Family AT4G32980 56.731 2.43e-109 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Glsi10g0496 POX 6.1e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0496 10 3174446 3177785 Glsi10g0496 10 3174446 3177785 ECH