Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0478 ATGGCATTGTATGGTACCAAGTTGAGGAAACCACTTACCAGTTACCAGTTACCAGTTAGCAGTTACCACTTACCGTTGCGTTCCAAAAGAAGAGTGGACATGGGAAGAGCTCCTTGCTGTGACAAAGCAAATGTTAAGAGAGGGCCTTGGTCTCCCGAAGAAGACGCTACTCTCAAGAGTTATGTAGAGGCTCACGGCCTTAGGAGGTGTGGCAAGAGTTGCCGTCTACGGTGGCTCAATTATCTTAGGCCAGACATCAAACATGGAGGTTTTACGGAAGAGGAGGACAACATCATTTGTACCCTCTATGGTCAAATGGGAAGCAGGCAAATATGGTCTGCCATAGCCTCTCAGCTTCCTGGCAGAACAGACAACGATGTGAAGAACTACTGGAACACGAAATTGAAGAAGAAGCTAATGGCAGGAAAAGTGACCCTCAAAACAATTACCCACAGTGGCATTCTTCCTTCGACCCAATCACTGACCCAAAATTCAGATTTTCCTGCTTCACAAAATCAGAGTCCTTCGCCGTCAACGCTGTCAATCTTGACCGATGCTAATTCTGGGTTTAACGTTAACACTCAAAGCATGAGTTTTGACCCAATCCAATTATATAGTACTAGTCCAGGGTTCATGGATGTCTCAGAAATGAATGCAAGTTCAAGGAACAATCCCACGATGTCGGATTCAAGTTTAATTGCAGTGGACAACAAGTGTTTATCTCTGCTGGATCATGATGGTGATGAAGAGACCCAAGTCTTAATGGATTTTGGGTATGGATTTCCTTGCGACCTTGTCAATGGCCTTTACTCCCAAGAGAAAGTGGGTGAACTTGCTCCAAGTTGGTACCCTGATCAGTTGGTTGATTTTAGCTATGCTGACATTAAGCCACAGGGACTGAATCAAAATGTTGTGTAG 918 0.4466 MALYGTKLRKPLTSYQLPVSSYHLPLRSKRRVDMGRAPCCDKANVKRGPWSPEEDATLKSYVEAHGLRRCGKSCRLRWLNYLRPDIKHGGFTEEEDNIICTLYGQMGSRQIWSAIASQLPGRTDNDVKNYWNTKLKKKLMAGKVTLKTITHSGILPSTQSLTQNSDFPASQNQSPSPSTLSILTDANSGFNVNTQSMSFDPIQLYSTSPGFMDVSEMNASSRNNPTMSDSSLIAVDNKCLSLLDHDGDEETQVLMDFGYGFPCDLVNGLYSQEKVGELAPSWYPDQLVDFSYADIKPQGLNQNVV 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0478 305 CDD SANT 91 135 IPR001005 -
Glsi10g0478 305 Gene3D - 40 88 - -
Glsi10g0478 305 Pfam Myb-like DNA-binding domain 47 82 IPR001005 -
Glsi10g0478 305 Pfam Myb-like DNA-binding domain 89 133 IPR001005 -
Glsi10g0478 305 Gene3D - 90 154 - -
Glsi10g0478 305 ProSiteProfiles Myb-like domain profile. 42 82 IPR001005 -
Glsi10g0478 305 ProSiteProfiles Myb-like domain profile. 83 135 IPR001005 -
Glsi10g0478 305 SMART sant 87 137 IPR001005 -
Glsi10g0478 305 SMART sant 46 84 IPR001005 -
Glsi10g0478 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 82 IPR017930 -
Glsi10g0478 305 MobiDBLite consensus disorder prediction 160 182 - -
Glsi10g0478 305 SUPERFAMILY Homeodomain-like 44 131 IPR009057 -
Glsi10g0478 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 139 IPR017930 -
Glsi10g0478 305 PANTHER OS09G0431300 PROTEIN 34 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0478 Glsi-ChrGlsi10 3073492 3078213 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0478 34 140 MYB Transcription Factor Family AT3G49690 72.500 3.40e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi10g0478 Myb_DNA-binding 1.7e-10 CL0123