Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0476 ATGATGATCCGAGAATCAACGCGTTTGATCTCCAACCTTCAAATTTCTGATTCGGATCCATCTGACAATTCAATGAGAGCATCTCCATCTCCATTCCCCATTGATGGTTTCTCTGTTAACATCAATGTCAATGCCGGTGGTTGCGATTCGTCCACCGCCCTCCACCATTTTCTTTCCAACGATTTCACCCCCACTGAGTTGGATTCATTCTGCGAAGATTTTGACGTGCCTTTCGATGTTTTCTCCGGGGATCATTTCCGTATGTTCGAGTTTAAGGTCCGGAAATGCGCTCGTAGCAGGTCACATGACTGGACGGAGTGTCCGTACGCCCACTTCGGCGAGAAGGCTCTCCGGAGAGATCCTAGGAAATATCACTATTCCGGCACAGCATGCCCCGAGTTTCGCAAAGGGACTTGCATGAAAGGTGATTCGTGCGAGTTTGCTCACGGAGTGTTTGAATGTTGGCTTCACCCGTCTCGTTACAGGACCCAGCTCTGCAAGGACGGAACAAATTGTCGCCGCCGAGTTTGTTTCTTCGCTCACAATTCGGAGCAACTGCGGCTCTTGGGCAAATCATCGGACGGGTCACGGATTTTCCACGCTTTTGATTCTTCTTGGACTAACGCTTCCTTTGTTTCATCGCCTACTTCAGTCCTCAACTCGTCGCCGATTTCTTCGCTTTCTAACTCCCCACCCTCCTCGCCGGGCAACCCCCAATACGGCGGTAGATCGTTCAACGCCATGAGTGAAATAGCCAACTCAATGCGTAATGTTCAACTCGATAATCTGCCTTCTACAGGTGGTCCCCAGGTGGGCCCTGTGTATGGTTCTCCTCGTGGTTTCCAGGTGGGTTCTACGTTTGGTTCTCCTCGTGGTTCCAATCTCCGTTCCGAGTTTTGCAGCCTTCCATCAACTCCGACGCGGGTCAAGACAAAGTCTGGGTTTAGTCCACTGGACCTCTGGGACCAGGCATACCAAGAAGAACCTGCTATGGAGAGGGTGGAATCGGGCAGAGAACTTAGAGCCAAAATCTACGCCAAGCTCAGTAAGGAGAACTCTTTTGGGCGAAGCAACACGGCTTTCAGCTCCTCCTGA 1095 0.5105 MMIRESTRLISNLQISDSDPSDNSMRASPSPFPIDGFSVNINVNAGGCDSSTALHHFLSNDFTPTELDSFCEDFDVPFDVFSGDHFRMFEFKVRKCARSRSHDWTECPYAHFGEKALRRDPRKYHYSGTACPEFRKGTCMKGDSCEFAHGVFECWLHPSRYRTQLCKDGTNCRRRVCFFAHNSEQLRLLGKSSDGSRIFHAFDSSWTNASFVSSPTSVLNSSPISSLSNSPPSSPGNPQYGGRSFNAMSEIANSMRNVQLDNLPSTGGPQVGPVYGSPRGFQVGSTFGSPRGSNLRSEFCSLPSTPTRVKTKSGFSPLDLWDQAYQEEPAMERVESGRELRAKIYAKLSKENSFGRSNTAFSSS 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0476 364 PANTHER UNKEMPT FAMILY MEMBER 44 359 IPR045234 -
Glsi10g0476 364 SMART c3hfinal6 125 151 IPR000571 GO:0046872
Glsi10g0476 364 SMART c3hfinal6 160 183 IPR000571 GO:0046872
Glsi10g0476 364 FunFam Zinc finger CCCH domain-containing protein 66 83 151 - -
Glsi10g0476 364 MobiDBLite consensus disorder prediction 222 245 - -
Glsi10g0476 364 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 130 150 IPR000571 GO:0046872
Glsi10g0476 364 Gene3D - 124 188 - -
Glsi10g0476 364 ProSiteProfiles Zinc finger C3H1-type profile. 126 152 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0476 Glsi-ChrGlsi10 3069588 3070682 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0476 75 235 C2H2 Transcription Factor Family AT5G12850 55.758 3.21e-55 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi10g0476 zf-CCCH 5.4e-05 CL0537