Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0472 ATGGAGGAATATAATACTAATCTGAGCGAAAACACAGGTCCAAGAACAAATTTCTTGTACTCGTCGGGTGGTTCAAGCGTGGGGAATCATCACCAGCTGCCCATCAATACCTTTGATCTTCAGTCGGACTGCTTTCAATCCGATCAACCTCACCCAACTGTCAAAACCGAAGCCAACACCTCCCACCACACTCAGATTTTTCACTACCCTCTAATCAGACCAAATCTTCACCAACAGCACCAGCATGGAGGGGGCGAACCCTCTAACCAACTTGAAGCTATAAAAGCTAAAATCACTGCTCATCCTCAGTACTCCAATCTTTTAGAAGCTTACATGGATTGCCAAAAGGTCGGAGCTCCACCGGAAGTGGTGGCGCGTCTGGCGGCTGCTCGGCAGGAGTTTGAGGCAAGGCAGCGATCTTCAGCCAACTCCAGGGAAGTTTCAAAGGACCCAGAACTTGACCAATTCATGGAAGCTTACTATGACATGCTTCTGAAGTACCGGGAGGAATTAACAAGGCCTATACAAGAAGCAATGGATTTCATGCGGAGGATTGAAACGCAGCTAAATATGCTATGCAATGGACCCGTCCGGATCTTCTCTGATGATAAATGTGATGGTGTTGGTTCATCTGAAGAGGATCAAGACAATAGCGGTGGAGAAACAGAACTGCCCGAGATTGATCCCCGAGCTGAAGACCGTGAACTTAAAACCCACTTGCTGAGGAAGTATAGTGGTTACTTAGGCAGCCTAAAGCAAGAACTTTCAAAGAAAAAGAAGAAAGGAAAACTTCCAAAAGATGCTAGGCAAAAGCTACTGAGCTGGTGGGAATTACATTACAAATGGCCCTATCCTTCGGAATCAGAGAAGGTGGCGTTGGCAGAATCAACTGGATTGGACCAAAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAGCGGCACTGGAAGCCATCTGAAGACATGCAATTCATGGTGATGGATGGGCTGCATCCACAGAATGCAACTCTCTATATGGACGGTCACTACATGGCAGATGGTCACTACCGTCTAGGGCCATGA 1062 0.4642 MEEYNTNLSENTGPRTNFLYSSGGSSVGNHHQLPINTFDLQSDCFQSDQPHPTVKTEANTSHHTQIFHYPLIRPNLHQQHQHGGGEPSNQLEAIKAKITAHPQYSNLLEAYMDCQKVGAPPEVVARLAAARQEFEARQRSSANSREVSKDPELDQFMEAYYDMLLKYREELTRPIQEAMDFMRRIETQLNMLCNGPVRIFSDDKCDGVGSSEEDQDNSGGETELPEIDPRAEDRELKTHLLRKYSGYLGSLKQELSKKKKKGKLPKDARQKLLSWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQNATLYMDGHYMADGHYRLGP 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0472 353 ProSitePatterns 'Homeobox' domain signature. 293 316 IPR017970 GO:0000981|GO:0006355
Glsi10g0472 353 SUPERFAMILY Homeodomain-like 256 330 IPR009057 -
Glsi10g0472 353 Pfam Homeobox KN domain 275 314 IPR008422 GO:0003677|GO:0006355
Glsi10g0472 353 CDD homeodomain 267 319 IPR001356 GO:0003677
Glsi10g0472 353 MobiDBLite consensus disorder prediction 204 232 - -
Glsi10g0472 353 Pfam ELK domain 235 256 IPR005539 GO:0003677
Glsi10g0472 353 Gene3D - 260 322 - -
Glsi10g0472 353 SMART KNOX1_2 92 136 IPR005540 GO:0003677|GO:0005634
Glsi10g0472 353 ProSiteProfiles ELK domain profile. 235 255 IPR005539 GO:0003677
Glsi10g0472 353 SMART HOX_1 257 322 IPR001356 GO:0003677
Glsi10g0472 353 Pfam KNOX1 domain 93 135 IPR005540 GO:0003677|GO:0005634
Glsi10g0472 353 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 92 325 - -
Glsi10g0472 353 SMART KNOX2_2 143 194 IPR005541 GO:0003677|GO:0005634
Glsi10g0472 353 SMART ELK_2 235 256 IPR005539 GO:0003677
Glsi10g0472 353 Pfam KNOX2 domain 147 193 IPR005541 GO:0003677|GO:0005634
Glsi10g0472 353 FunFam Homeobox protein knotted-1-like 2 260 322 - -
Glsi10g0472 353 ProSiteProfiles 'Homeobox' domain profile. 255 318 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0472 Glsi-ChrGlsi10 3043041 3046286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0472 43 353 Homeobox Transcription Factor Family AT4G08150 70.988 3.59e-153 434
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Glsi10g0472 KNOX2 1.1e-24 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0472 10 3043041 3046286 Glsi10g0472 10 3043041 3046286 ECH