Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0470 ATGGGTTTCTCCAATACAGGCCTTCGACTTGGTCTTGGTCTTGGCCTTCATGATCAGTCAGAGAATTGCACGGAGACCGTTCACCACAGAGAAAGCCAACAGAAAATAATGGAGAAGGATCCGGTAAAATGTAATAAGGCATACCCATCTCTTCTCACCTTAGGACCACCTGATCACGAGGCAAATCAACTAGCTACAAAGACTGAATCTGTTAATTTCCATCCAATAGCCTCTTCTCCCAGCGCAGTGTCCTCGTTTTCCAACTGTTCTAGCATCAAGAGGGAGAGAGAGTTTGTGGGCGAAGAGTTTGAGGTAGAGGTAGAGAAGGTTTCTTCAAAGGCAGGTGATGTAGATGAAGATGGTAATCCCAGAAAGAAACTTAGGCTCACCAAAGAACAATCTGCGGTTTTAGAGGACAGCTTCAAAGAGCACTCTACTCTCAACCCAAAGCAGAAGCAAGAATTAGCAAGGAAGCTAAACCTGCGTGCGAGACAAGTAGAAGTGTGGTTTCAAAACAGGAGAGCCAGGACAAAACTGAAACAAACCGAGGTGGACTGTGAGTTACTGAAGAAGTGCTGCGACACACTAACACAAGAGAACAAGAGACTGCAAAAGGAGCTGCAAGAGCTGAAATCAATGAAAACAACGCCGGGAGGCTTTTACATGCAGCTTCCAGCGCCTACCCTCACCATATGCCCGTCTTGCGAGAGGATTTGTGGCGGCGGTGGCGGCAATGGCCCTTCTGCCACCACCGCCTTCTTTATTGGCTCAAAGACCCACCACTTGTACAAACCATTCACCCACTCATCCGCAGCTTGCTAG 822 0.4781 MGFSNTGLRLGLGLGLHDQSENCTETVHHRESQQKIMEKDPVKCNKAYPSLLTLGPPDHEANQLATKTESVNFHPIASSPSAVSSFSNCSSIKREREFVGEEFEVEVEKVSSKAGDVDEDGNPRKKLRLTKEQSAVLEDSFKEHSTLNPKQKQELARKLNLRARQVEVWFQNRRARTKLKQTEVDCELLKKCCDTLTQENKRLQKELQELKSMKTTPGGFYMQLPAPTLTICPSCERICGGGGGNGPSATTAFFIGSKTHHLYKPFTHSSAAC 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0470 273 Gene3D - 116 185 - -
Glsi10g0470 273 Coils Coil 186 216 - -
Glsi10g0470 273 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 8 246 - -
Glsi10g0470 273 SMART halz 180 223 IPR003106 GO:0006355|GO:0043565
Glsi10g0470 273 Pfam Homeobox associated leucine zipper 180 214 IPR003106 GO:0006355|GO:0043565
Glsi10g0470 273 Pfam Homeodomain 124 178 IPR001356 GO:0003677
Glsi10g0470 273 CDD homeodomain 123 181 IPR001356 GO:0003677
Glsi10g0470 273 ProSitePatterns 'Homeobox' domain signature. 155 178 IPR017970 GO:0000981|GO:0006355
Glsi10g0470 273 ProSiteProfiles 'Homeobox' domain profile. 120 180 IPR001356 GO:0003677
Glsi10g0470 273 FunFam Homeobox-leucine zipper protein 18 106 185 - -
Glsi10g0470 273 SUPERFAMILY Homeodomain-like 121 188 IPR009057 -
Glsi10g0470 273 SMART HOX_1 122 184 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0470 Glsi-ChrGlsi10 3035998 3037103 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0470 1 273 Homeobox Transcription Factor Family AT2G22800 50.853 6.59e-66 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Glsi10g0470 Homeodomain 3e-17 CL0123