Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0467 ATGGGCAGGGCTCCTTGCTGCGACAAAGCAAACGTGAAGAGAGGCCCTTGGTCGCCTGAAGAAGATGCCAAGCTCAAGTCCTATATCGAGAACAACGGCACGGGTGGTAACTGGATTGCTTTGCCTCAAAAGATCGGGCTCAAGAGATGTGGGAAGAGTTGCCGTCTTAGATGGCTAAACTATCTTCGACCTAATATCAAGCACGGGGGTTTCTCTGAAGAAGAAGACAATATTATTTGCAGCCTCTACGTTAGTATTGGAAGCAGGTGGTCCGTGATCGCAGCCCAATTGCCGGGAAGAACTGACAATGATATAAAGAACTACTGGAACACAAGGCTGAAGAAGAAGCTTCTGGGCAAGCACCGCAAAGAACAACAGCCTCGTAGAGGCAACAGTTTTAAGCAGGAAGCTAATAGAGGGAGTGCGAATTCCTTGCCTCCGGAAAATACGACTCAACACCAGCCATATTGGCCACACATGCCTGTCCTAAACCAAGGCCCATCTTTCAACGACCAAGATTCCATCAGAAAATTGCTTATCAAGCTCGGAGGAAGATTTTCTGATGATTACCAGCCTACCCTTGATGGTACTCCCTCCACCCAACAAATTTATCAACAAGAAGTTGATGTGGCCTCTTCTGCTTGCATGAATACTATTAACAACAACCAAGGACAATTCCCACAAGGCAATTTCACCGCACCACTTGAGGAAATTGCGCCTACTTATCCACAAGGATTAGACGGGCTGGAGTTCTTGTATGGAGAGGACATGGTCAATTATGATAACATAGGCCCTAGTTGCAGCCAAAGTAGTGATTGGGGTGAGACCAGCTCTCTCATTTATCCACCTCTTGCTGCTTCTAATTACCATGAGACGCAAAAAGAATGTGCTTTTCAAGAGTTGAGACCTCCTAAATTCAAGTGCAGATTAGTTCATGGATCTCAGGCATCTAATGACTGGGCCCGTGGAGATCAGCAAAACTTAAGTTTAACTGCCGGGTTTCACTCAGCATTTAATTGGTGTCGCCTAGAAGTATTTCAGGGCTTTAGCCCTTTCTGA 1059 0.4618 MGRAPCCDKANVKRGPWSPEEDAKLKSYIENNGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKEQQPRRGNSFKQEANRGSANSLPPENTTQHQPYWPHMPVLNQGPSFNDQDSIRKLLIKLGGRFSDDYQPTLDGTPSTQQIYQQEVDVASSACMNTINNNQGQFPQGNFTAPLEEIAPTYPQGLDGLEFLYGEDMVNYDNIGPSCSQSSDWGETSSLIYPPLAASNYHETQKECAFQELRPPKFKCRLVHGSQASNDWARGDQQNLSLTAGFHSAFNWCRLEVFQGFSPF 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0467 352 CDD SANT 71 113 IPR001005 -
Glsi10g0467 352 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Glsi10g0467 352 Gene3D - 7 68 - -
Glsi10g0467 352 FunFam Transcription factor RAX3 7 68 - -
Glsi10g0467 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Glsi10g0467 352 SMART sant 13 64 IPR001005 -
Glsi10g0467 352 SMART sant 67 115 IPR001005 -
Glsi10g0467 352 PANTHER OS09G0431300 PROTEIN 1 218 - -
Glsi10g0467 352 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Glsi10g0467 352 MobiDBLite consensus disorder prediction 116 157 - -
Glsi10g0467 352 FunFam Transcription factor RAX3 70 143 - -
Glsi10g0467 352 CDD SANT 16 62 IPR001005 -
Glsi10g0467 352 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Glsi10g0467 352 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Glsi10g0467 352 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Glsi10g0467 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Glsi10g0467 352 Gene3D - 70 142 - -
Glsi10g0467 352 MobiDBLite consensus disorder prediction 131 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0467 Glsi-ChrGlsi10 3002594 3008269 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0467 1 188 MYB Transcription Factor Family AT3G49690 65.347 1.76e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi10g0467 Myb_DNA-binding 5.1e-13 CL0123