Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0460 ATGGGTGGTCATGAAAATGCCATGGGTTTTCAACATGGACCCGACAGCATCCTGAATTGTCCGTCGTCGGGTTTGAGCACAAATGTTTCAGAAATCCCAATTAGTTCTGTGTCTATGGCTGCTAAGCCTTCAGTTGTAGCTAATCCTTTTCTTAGTTCTGCTACTTGGGATCCGCTTCTTTCATTGAATCAGAGTCAAACTTTTGGAGGCTCTTCAATGATTTCCCATAGTCAGTATGGCAGTTCATCTTACCCTCTTGTGTTGGAAAATCAGGGATTGAGTAGCACCTCTCACCTTGTTCAGTATATGTCTGACTCAAATTTTGCGGACATGGTACCAAAGATTCCCTCCTACGGAAGTGGAAGCTTCTCAGAAATGGTTGGCTCTTTCCCCCAACCTGGGTGTGGTGATTTAACTAATTCAGGGTATCGGCCAAATTATAATGCAAACGAGGAGGCAGGCATCGAAAGAGCTCCAACAAATGGTGCACAATGTCAGCTTGAGGATTCAACTCCTGACGAAGGAGCCTCAGGATCTGCACCTAATGGAAGTAGAAGAAAACGCGGGCTTGATCAAAGTTCTACTTTCAGTCCAAATAAGAATGCCGAAGGGGAACCACCAGTGAAGGATTCTTCTGCTGGTGTGAAAGAACACGATGAAAAAAGACAAAAAGTTGAGCAAATTAATACTAGTGCAGATTTGCGCGGCAAGCAATCATTAAAGCAAACTAAAGACAACTCTCACAGTGGAGAAGCTCCCAAAGAAAATTTCATTCATGTGAGAGCTCGAAGAGGCCAAGCCACAAACAGCCATAGCCTTGCAGAAAGGGTAAGAAGAGAAAAGATTAGTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAACTGGCAAAGCCGTAATGCTGGATGAGATCATCAACTATGTGCAATCACTGCAGCAACAGGTCGAGTTTTTGTCAATGAAACTTGCCACTGTGAACCCAGAACTGAATTTTGATGTTGAGCGGATCCTATCCAAAGATATTCTTCAGTCGCGCATTGGAAATGGAGGAATTGGTGGGTATGGTGCTGGTATCAACTCTCACTCATTTCCTAGTGGAAGTTTTCAGGGAACCCTGGCAGGCATGCCAAGCACGTCACCACAATTCCCTCCTTTGCCTCAGACTGTTCTGGACCATGAGTTTCAAAGTCTCTATGGAACGGGATACGATTCCAGTACAGCTCTTGACAACTTGGGACCCAATGGGCGATTGAAAACAGAGTTGTAA 1281 0.4465 MGGHENAMGFQHGPDSILNCPSSGLSTNVSEIPISSVSMAAKPSVVANPFLSSATWDPLLSLNQSQTFGGSSMISHSQYGSSSYPLVLENQGLSSTSHLVQYMSDSNFADMVPKIPSYGSGSFSEMVGSFPQPGCGDLTNSGYRPNYNANEEAGIERAPTNGAQCQLEDSTPDEGASGSAPNGSRRKRGLDQSSTFSPNKNAEGEPPVKDSSAGVKEHDEKRQKVEQINTSADLRGKQSLKQTKDNSHSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPELNFDVERILSKDILQSRIGNGGIGGYGAGINSHSFPSGSFQGTLAGMPSTSPQFPPLPQTVLDHEFQSLYGTGYDSSTALDNLGPNGRLKTEL 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0460 426 MobiDBLite consensus disorder prediction 163 276 - -
Glsi10g0460 426 FunFam Basic helix-loop-helix transcription factor 263 335 - -
Glsi10g0460 426 Gene3D - 263 337 IPR036638 GO:0046983
Glsi10g0460 426 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 266 316 IPR011598 GO:0046983
Glsi10g0460 426 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 264 334 IPR036638 GO:0046983
Glsi10g0460 426 MobiDBLite consensus disorder prediction 163 178 - -
Glsi10g0460 426 CDD bHLH_AtBPE_like 256 341 - -
Glsi10g0460 426 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 175 374 IPR024097 GO:0006355
Glsi10g0460 426 SMART finulus 272 322 IPR011598 GO:0046983
Glsi10g0460 426 MobiDBLite consensus disorder prediction 186 201 - -
Glsi10g0460 426 Pfam Helix-loop-helix DNA-binding domain 269 317 IPR011598 GO:0046983
Glsi10g0460 426 MobiDBLite consensus disorder prediction 238 261 - -
Glsi10g0460 426 MobiDBLite consensus disorder prediction 210 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0460 Glsi-ChrGlsi10 2946038 2948165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0460 1 426 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 43.088 1.26e-87 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi10g0460 HLH 4.5e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0460 10 2946038 2948165 Glsi10g0460 10 2946038 2948165 ECH