Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0458 ATGAAGTCCATGAATGATAGTAACAACGATGGGAATCACAATCATAACTGGTTGGGGTTCTCTCTCTCACCCCACATGAAAATGGAGGCTACTTCTGTCCCTCCTCTTCATCATCACGATCATCATCAGTATCATCATCAAGCCCAAGCTTCTGCTGCTGTCTCCACCGCTGTTCCAACAACCTTCTGTTTGTCTCCTTCTCACCTTAACACATATGGTATATGTTATGCTGATGGGGAAAACGCTGCCTTTCATTCTTCTCCCTTGTCTGTCATGCCACTGAGGTCTGATGGCTCACTTTGTATAATGGAAGCTCTCACTAGATCACAAACGCAAGTGTTGGTGCCGAGTTCGTCTCCGAAACTGGAGGACTTTCTAGGTGGTGCAACTATGGGGACTCACGATTATGGAGTTAACGAAAGAGAGGCAATGGCTCTCAGCCTAGACAGCCTATACTACAGCCAAAATGCAGAGCCTCAAACCCACAGAGACCTTTCTCTGGACTTTCTTTCAGAACCATTCAGGCAACAAGGGAACATGTCTATCCAATCCCATCCTTACTATGCTGGAATTGCTTGCCATGGTATTTATCAAGCCCCATTGGAGGAAGAAGCCAAGGACAATCACGTCTCCGTTTGTGACGACCGAATTCCTCAAATGGCCGAGGAAGGCACGTCTTGCTTGAGAAACTGGGTGACCCACAGGGAGTATTCTACTCAACCGGCTCCACTGCAGAAAAAGAACGGGGGCATGGGGGATGATCGTGGAGCCTCTGGGTCCGTTGGCAAAGCAGGCTGTGGAGATTTACAGTCTTTAAGCTTATCAGTGAGTCCTGGCTCTCAGTCTAGCTGTGTGACCGCTCCACGGCAGATCTCCCCCTCTGGAACGGACTTGGTGACCAGGGAAGCCAAGAAGAGAGGGCCTGGGAAGTTGGGCCCGAAGCAGCCTGTGCATAGGAAATCCATCGACACATTTGGCCAGAGAACGTCGCAGTATAGAGGCGTCACAAGGCACAGATGGACTGGCAGATATGAAGCGCATTTGTGGGATAACAGCTGCAAGAAGGAAGGGCAAACCAGGAAAGGAAGACAAGTTTATTTGGGGGGCTACGATATGGAAGAGAAAGCTGCAAGAGCCTATGATCTTGCGGCCCTCAAGTACTGGGGACCCTCTACCCATATTAACTTTCCGTTAGAAAATTACCAGGCAGAACTTGAAGAAATGAAGAACATGAGCAGGCAAGAATACGTTGCCCACTTGAGAAGAAAAAGCAGTGGATTTTCAAGGGGGGCTTCAATGTACAGAGGAGTGACGAGGCACCACCAACATGGAAGATGGCAAGCAAGGATAGGTAGGGTGGCAGGAAACAAGGACCTTTATCTTGGAACATTCAGTACTCAGGAGGAAGCAGCTGAAGCATATGACATTGCTGCAATCAAATTTCGTGGGGTAAATGCAGTCACTAACTTCGACATATCTAGATACGATGTTGAAAGGATCATGGCCAGCAACACTCTGCTGGCTGGGGAGCTAGCTCGACGAAACAAGGATAGCGAGCCGAGAACCGAGGCCACGGTGTATAATGCATCAAACCAGAGCAATGGGGAAGCAGTTGAAGCTGAAAGGAACGATGGCAGTGGTTCAGAGTGGAAGATGATGTTGTATCATGAATCTCCTCAGCAACAGTCAAATAGCTGTGTCCAGAAAACCGTCAACTGTGGAAATTATAGAAATTCTGCTATCTCTATGGCCCTCCAAGATCTCATAGGGATTGATTCAGTAGGTTCTGGCCAAGCCATTCTGGACGACACTGCCAAGATAGGGACGCATTTTTCAAACCCATCCTCGCTGGTGACCAGTTTAAGCAGCTCGAGGGAAGGCAGCCCTGATAAAACTGGTCCCACATTGCTCTTTCCAAAACCCCAAATGGCATCAAAGATAGGTAGCCCCATAGCTGGTGGCGTGAGTTCTTGGTTTCCCTCAGCAGCAGCAGCTCAATTGAGGCCAGCTGCTGCTATTTCCATGTCTCACTTGCCAGTTTTTGCTGCTTGGAATGATACCTGA 2064 0.4869 MKSMNDSNNDGNHNHNWLGFSLSPHMKMEATSVPPLHHHDHHQYHHQAQASAAVSTAVPTTFCLSPSHLNTYGICYADGENAAFHSSPLSVMPLRSDGSLCIMEALTRSQTQVLVPSSSPKLEDFLGGATMGTHDYGVNEREAMALSLDSLYYSQNAEPQTHRDLSLDFLSEPFRQQGNMSIQSHPYYAGIACHGIYQAPLEEEAKDNHVSVCDDRIPQMAEEGTSCLRNWVTHREYSTQPAPLQKKNGGMGDDRGASGSVGKAGCGDLQSLSLSVSPGSQSSCVTAPRQISPSGTDLVTREAKKRGPGKLGPKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQAELEEMKNMSRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISRYDVERIMASNTLLAGELARRNKDSEPRTEATVYNASNQSNGEAVEAERNDGSGSEWKMMLYHESPQQQSNSCVQKTVNCGNYRNSAISMALQDLIGIDSVGSGQAILDDTAKIGTHFSNPSSLVTSLSSSREGSPDKTGPTLLFPKPQMASKIGSPIAGGVSSWFPSAAAAQLRPAAAISMSHLPVFAAWNDT 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0458 687 MobiDBLite consensus disorder prediction 238 264 - -
Glsi10g0458 687 CDD AP2 330 397 IPR001471 GO:0003700|GO:0006355
Glsi10g0458 687 ProSiteProfiles AP2/ERF domain profile. 331 397 IPR001471 GO:0003700|GO:0006355
Glsi10g0458 687 MobiDBLite consensus disorder prediction 617 639 - -
Glsi10g0458 687 SUPERFAMILY DNA-binding domain 432 493 IPR016177 GO:0003677
Glsi10g0458 687 MobiDBLite consensus disorder prediction 278 297 - -
Glsi10g0458 687 Pfam AP2 domain 434 483 IPR001471 GO:0003700|GO:0006355
Glsi10g0458 687 Pfam AP2 domain 331 389 IPR001471 GO:0003700|GO:0006355
Glsi10g0458 687 SUPERFAMILY DNA-binding domain 330 399 IPR016177 GO:0003677
Glsi10g0458 687 Gene3D AP2/ERF domain 330 399 IPR036955 GO:0003700|GO:0006355
Glsi10g0458 687 Gene3D AP2/ERF domain 433 493 IPR036955 GO:0003700|GO:0006355
Glsi10g0458 687 Coils Coil 398 418 - -
Glsi10g0458 687 CDD AP2 432 493 IPR001471 GO:0003700|GO:0006355
Glsi10g0458 687 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 116 561 - -
Glsi10g0458 687 SMART rav1_2 433 497 IPR001471 GO:0003700|GO:0006355
Glsi10g0458 687 SMART rav1_2 331 403 IPR001471 GO:0003700|GO:0006355
Glsi10g0458 687 ProSiteProfiles AP2/ERF domain profile. 433 491 IPR001471 GO:0003700|GO:0006355
Glsi10g0458 687 MobiDBLite consensus disorder prediction 278 318 - -
Glsi10g0458 687 FunFam AP2-like ethylene-responsive transcription factor 432 493 - -
Glsi10g0458 687 FunFam AP2-like ethylene-responsive transcription factor ANT 330 399 - -
Glsi10g0458 687 PRINTS Ethylene responsive element binding protein signature 332 343 IPR001471 GO:0003700|GO:0006355
Glsi10g0458 687 PRINTS Ethylene responsive element binding protein signature 473 493 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0458 Glsi-ChrGlsi10 2933775 2936964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0458 1 538 AP2-EREBP Transcription Factor Family AT4G37750 51.042 3.19e-160 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Glsi10g0458 AP2 1.6e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0458 10 2933775 2936964 Glsi08g1789 08 12708763 12711799 CCT
Glsi10g0458 10 2933775 2936964 Glsi10g0458 10 2933775 2936964 ECH