Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0456 ATGGATTCTGACCAAGCCAAGCTGTTTGTGGGTGGCATTTCACGGGACACCACCGAAGATATTCTGAAAGACCACTTTGCTCAGTACGGCTCTGTTTTGGGTTCTACGATTTCGGTGGACCGTGGCACCAAAAATTCTAGAGGTTTTGGCTTTGTTAGGTTCTCTGATATCTCCGAAGCTGATAAAGCCCTTCAAAACACGCATGTAATACTAGGAAGAACGGTAGAAGTGAAAAAAGCAATACCCAGAAGCGAACAGCAACACCAAAACCAACCACAGAGTAGAGGTACGAGTAACTGTAGTAATAATGACAGTAGCCGTGACCATGTTAGGACTAAAAAGGTTTTTGTAGGAGGCTTATCGGCTAGTTTATCGGAGGAGGAGTTTAAGAAATATTTTGAGAGGTTTGGTAGAATAACGGACGTAGTGGTGATGCAGGACAGTATAACTCACCGGCCTAGGGGGTTTGGGTTCATTACTTTTGATTCAGAGGAATCCGTTGAAAATGTCATGCTAAAAAGCTTTCATGACTTGAATGGTAGACAGGTGGAGGTCAAGAGGGCTGTGCCTAAAGAGGGGAACAATGGTTGTGATGGTGTTAATAGAATGAGATATAAGAGTGGAAGAGGAGGCCCTAAAAGTTCCCCTCACTGTAGTCCTAGGTACTTGCTCCCTGGGTTTGCACCTCTTCCCTGGTACGGTGGTGATGGGGCATATTTTTATGGATCTAACACTTCTGGTTGTTGGTTCCCTATGGGAGAGTATGGGTGCAATGCTTATGCAGTTCCATTTGATGCTCCTAGGAACTTCTGGTATGGCCCTATGGTAACCAGTTCTCATGCTTGCCATGTGCCTTTTGCTAATCCTTCTCCAATTCCTGCACATGTGAGTGGTAGAGTTGGACTAGTTGGAAATGAAATTAGGGGTTACAACAGCATCGCGGGATCTGCGACAAATTTCAGATTTAATCAAGTTTTCGGTACAAGTGGATTTCTACCGGCTGACGTGACCTCACCTAAGATAGAGGAGGTAAAGCAGGATGTTGAGCCTTCGAGTTGGAAAGGAAGCAATGCTGAAACATCCAGTTAA 1089 0.4481 MDSDQAKLFVGGISRDTTEDILKDHFAQYGSVLGSTISVDRGTKNSRGFGFVRFSDISEADKALQNTHVILGRTVEVKKAIPRSEQQHQNQPQSRGTSNCSNNDSSRDHVRTKKVFVGGLSASLSEEEFKKYFERFGRITDVVVMQDSITHRPRGFGFITFDSEESVENVMLKSFHDLNGRQVEVKRAVPKEGNNGCDGVNRMRYKSGRGGPKSSPHCSPRYLLPGFAPLPWYGGDGAYFYGSNTSGCWFPMGEYGCNAYAVPFDAPRNFWYGPMVTSSHACHVPFANPSPIPAHVSGRVGLVGNEIRGYNSIAGSATNFRFNQVFGTSGFLPADVTSPKIEEVKQDVEPSSWKGSNAETSS 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0456 362 Gene3D - 85 203 IPR012677 -
Glsi10g0456 362 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 179 IPR000504 GO:0003723
Glsi10g0456 362 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Glsi10g0456 362 MobiDBLite consensus disorder prediction 342 362 - -
Glsi10g0456 362 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 277 - -
Glsi10g0456 362 MobiDBLite consensus disorder prediction 82 108 - -
Glsi10g0456 362 SMART rrm1_1 114 186 IPR000504 GO:0003723
Glsi10g0456 362 SMART rrm1_1 7 78 IPR000504 GO:0003723
Glsi10g0456 362 FunFam Heterogeneous nuclear ribonucleoprotein A2/B1 108 192 - -
Glsi10g0456 362 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Glsi10g0456 362 CDD RRM2_Hrp1p 114 191 - -
Glsi10g0456 362 MobiDBLite consensus disorder prediction 84 105 - -
Glsi10g0456 362 SUPERFAMILY RNA-binding domain, RBD 3 107 IPR035979 GO:0003676
Glsi10g0456 362 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 190 IPR000504 GO:0003723
Glsi10g0456 362 SUPERFAMILY RNA-binding domain, RBD 106 212 IPR035979 GO:0003676
Glsi10g0456 362 Gene3D - 4 84 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0456 Glsi-ChrGlsi10 2916008 2917409 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0456 8 263 Eukaryotic Initiation Factors Gene Family AT4G34110 26.718 1.81e-16 79.0