Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0455 ATGGAAGAAGCCTCGGCCAGTACGCAACGACGTGGAGAAGATTGTGTCGATGAGAATGCTGTCTCAAAAGCGACAACATTCCCCTACACCGCCAAGTCTTCTATTCTACTATACCCAAATAAATTACTTTATCGCCCTCTCTCTATAATGCATCTATTAAACTTTGGCAAGCACCTTGTGAGCCCACTCCAATTTCGCTATCTCAATGAATGCGAATCTTGTTTTGGGGTCCGAAAATGGAAGGAAATAAATCTGTGTCCCTGCAAATTGGACGCACAGGACCATCGTGGGGTGTCCCTGGACCATGGCCTAAGTACGGTTGATATTAGGCTTCTTCCTAGTCTAGTTTTTGTTGGGCTTTTCTATATGGATCTTTTGGCGCTGGGTTTGGAGGGGTTGGTGGGTTCAGACACTGGGTTTGCTTCTCTAGTATCAGATCCTGAGACAAAGCAGAAATGGTACGGATCTGGATTCCTTAAGCAGGAGAGATCTGGCACAACTGAAGATGACTGGGGGAGCTCCAAACTGCTTAAGACTGATGACATCTCTGCCTCCAAAGCAATGCTGCTTCATCACAGGAACTCCTTACTGAGATCTAATACCACTCTCTTTTCTGATGGTCATCACCACCAGCAAATGCTTAGCTTCTCTTCTCCCAAATCAGACTCTCTGTTAACGGATAAGACCTCCCCCACCGCAACGTTGCCCTTTTCTTACCCATTAACCAGTTACAGCAGAAATACAGTTTACAACTCTGGAAGCACGCATGGGGTTTTAACAGGGACCAGAGGGCCATTCACTCCGTCTCAGTGGATGGAGCTGGAACAGCAGGCCTTGATCTACAAGTATATAACTTCAAAAGTGGCCATACCTTCTCATCTGCTCATCCCTATCAGAAAAGCGCTTGATTCTGCTAGGTTCAGTAATTTTTCAAACGGACTCCTAAGGCCCAATGCACTGGGATGGGGAGCTTTCCATCTGGGATTCTCGAACAGCACTGATCCTGAGCCTGGAAGGTGTCGGAGAACAGATGGGAAGAAATGGCGGTGCTCGAGAGATGCCGTTGTGGACCAGAAGTATTGTGAGCGGCACATGAACAGAGGCCGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAATCAGGCCATGCCGTCACCGGGGCCACCGCTTCAAAGCTTATGCCTAATGCTTCCGCGCCCGTGTCGGTAGTGGTGCCAGGCAACGGTGCGTCCAACAGCCTTACCTTCGCACACCACGAATCCAAGAATTTGCAGCCTCTTGCATCTAATACTTGTGCGGCTACCAACATCAACAGGATGTTTCTGAACAACAAGGAGAATGCGAGTGGGCGAATGCAGGACTGTTCTGCCCTTCCAATGCTGCCTCCCACTCTTGATCTTAAACCCAAGGAAAACCCTTTTATGATTCATAAAGAGCAAATTCTATATGGAGAATCCTCTAGGAATGAGTTTGGTCTTGTCACTTCTGCCTCCCTACTAAACCCTTCACAGAAAAGCTCCACCTTGTTGAGTAGCAGATGCTTTGGTTCTTCACAAAACCCCTCTGATCGAGAAACTGAGTCGCAACAATCCCTTAGGCATTTCATTGATGACTGGCCCAAAGACCAGTCTGATCGCTCTGGTGTTTCATGGCCCGAACTTGACATGCAATCAGAGAGGACCCAGCTATCAATCTCTATCCCCATGACCTCGTCAGACTTTATGTCGTCCACTACCTCTCCCGCCGATGAAAAGGTCACATTGTCACCTCTTCGACTATCAAGGGAGCTAGATCCAATCCAAATGGGTTTGGGTGTGGGAAGTGCTCTCAACGAATCGAGTAATAGGCAGGCTAATTGGATTCCAATTGCTTGGGAGAGTTCAATGGGTGGTCCTCTTGGGGAGGTTCTTCATCTTAGTAATAACAATACAAGCGACTGTATCAATAACTCATCTGCTCTTAACCTCATGACTGATGGGTGGGATAATAGTCCTCCACTAGGGTCATCTCCTACTGGGGTTTTGCAGAAGACCGCATTTGGATCGCTTTCCAATAGCAGCGCTGGGAGCAGTCCAAGGGCAGAGAATAAGACCCTCGAAGGGTCGAGGTTGTGTAATGACCTCCTTGGATCCACTCTTGGGAATTAG 2145 0.4811 MEEASASTQRRGEDCVDENAVSKATTFPYTAKSSILLYPNKLLYRPLSIMHLLNFGKHLVSPLQFRYLNECESCFGVRKWKEINLCPCKLDAQDHRGVSLDHGLSTVDIRLLPSLVFVGLFYMDLLALGLEGLVGSDTGFASLVSDPETKQKWYGSGFLKQERSGTTEDDWGSSKLLKTDDISASKAMLLHHRNSLLRSNTTLFSDGHHHQQMLSFSSPKSDSLLTDKTSPTATLPFSYPLTSYSRNTVYNSGSTHGVLTGTRGPFTPSQWMELEQQALIYKYITSKVAIPSHLLIPIRKALDSARFSNFSNGLLRPNALGWGAFHLGFSNSTDPEPGRCRRTDGKKWRCSRDAVVDQKYCERHMNRGRHRSRKPVEGQSGHAVTGATASKLMPNASAPVSVVVPGNGASNSLTFAHHESKNLQPLASNTCAATNINRMFLNNKENASGRMQDCSALPMLPPTLDLKPKENPFMIHKEQILYGESSRNEFGLVTSASLLNPSQKSSTLLSSRCFGSSQNPSDRETESQQSLRHFIDDWPKDQSDRSGVSWPELDMQSERTQLSISIPMTSSDFMSSTTSPADEKVTLSPLRLSRELDPIQMGLGVGSALNESSNRQANWIPIAWESSMGGPLGEVLHLSNNNTSDCINNSSALNLMTDGWDNSPPLGSSPTGVLQKTAFGSLSNSSAGSSPRAENKTLEGSRLCNDLLGSTLGN 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0455 714 ProSiteProfiles WRC domain profile. 334 378 IPR014977 -
Glsi10g0455 714 Pfam QLQ 265 299 IPR014978 GO:0005524|GO:0005634|GO:0006355
Glsi10g0455 714 Pfam WRC 335 377 IPR014977 -
Glsi10g0455 714 ProSiteProfiles QLQ domain profile. 265 300 IPR014978 GO:0005524|GO:0005634|GO:0006355
Glsi10g0455 714 MobiDBLite consensus disorder prediction 509 549 - -
Glsi10g0455 714 MobiDBLite consensus disorder prediction 526 543 - -
Glsi10g0455 714 MobiDBLite consensus disorder prediction 680 700 - -
Glsi10g0455 714 SMART QLQ_2 264 300 IPR014978 GO:0005524|GO:0005634|GO:0006355
Glsi10g0455 714 MobiDBLite consensus disorder prediction 367 391 - -
Glsi10g0455 714 MobiDBLite consensus disorder prediction 509 525 - -
Glsi10g0455 714 PANTHER GROWTH-REGULATING FACTOR 5 208 576 IPR031137 GO:0005634|GO:0006351|GO:0032502
Glsi10g0455 714 MobiDBLite consensus disorder prediction 680 696 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0455 Glsi-ChrGlsi10 2903475 2911216 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0455 144 680 GRF Transcription Factor Family AT2G22840 44.345 1.03e-101 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Glsi10g0455 WRC 6.9e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0455 10 2903475 2911216 Glsi10g0455 10 2903475 2911216 ECH