LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi10g0450	ATGTTCCTCTACGATGACGAAGCGGTCCCCTTCTCATGTCCACTTTTTGAAACCATACTTACAGCGAGTGATATACAGGACTTGTTGTCCCTCGTTCAATCTGGAGAGCCGGCCAGTCCTAGCTCCTGTTCTCAAGGATCAAACCGGGCGGCTCACTCGATGGCCGAAAAGAAGAGTAGGCGCATGCAATCGAACCGGGAGTCAGCCCGGCGGTCCCGCTGGAGAAAGAAGAGGCATTTAGAGAACCTCACGTACCAAGTGAACCGCTTGAGAATTGAAAACCGAGAACTGAAAAACCGGCTAGGCTTGACCCTGCATCAGCATCTCCTAGTTTCCCTAGAGAATGGTCAGCTAAGATCCGAATCCACAATCCTTTTGGGCAGACTTTCAGATTTATATCGGGTTTTGGGCACCATGCATTTACAGTAG	429	0.5012	MFLYDDEAVPFSCPLFETILTASDIQDLLSLVQSGEPASPSSCSQGSNRAAHSMAEKKSRRMQSNRESARRSRWRKKRHLENLTYQVNRLRIENRELKNRLGLTLHQHLLVSLENGQLRSESTILLGRLSDLYRVLGTMHLQ	142

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi10g0450	142	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	60	75	IPR004827	GO:0003700\|GO:0006355
	Glsi10g0450	142	MobiDBLite	consensus disorder prediction	53	69	-	-
	Glsi10g0450	142	MobiDBLite	consensus disorder prediction	36	74	-	-
	Glsi10g0450	142	SUPERFAMILY	Leucine zipper domain	57	108	IPR046347	GO:0003700\|GO:0006355
	Glsi10g0450	142	Pfam	bZIP transcription factor	57	102	IPR004827	GO:0003700\|GO:0006355
	Glsi10g0450	142	Coils	Coil	80	100	-	-
	Glsi10g0450	142	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	55	101	IPR004827	GO:0003700\|GO:0006355
	Glsi10g0450	142	FunFam	BZIP transcription factor	55	106	-	-
	Glsi10g0450	142	CDD	bZIP_plant_GBF1	58	108	IPR045314	GO:0003700\|GO:0006355
	Glsi10g0450	142	Gene3D	-	55	108	-	-
	Glsi10g0450	142	SMART	brlzneu	53	124	IPR004827	GO:0003700\|GO:0006355
	Glsi10g0450	142	PANTHER	BZIP TRANSCRIPTION FACTOR 44	40	139	-	-
	Glsi10g0450	142	MobiDBLite	consensus disorder prediction	36	52	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi10g0450	Glsi-ChrGlsi10	2868380	2868808	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi10g0450	12	132	bZIP Transcription Factor Family	AT4G37730	41.727	4.40e-20	82.0

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Glsi10g0450		bZIP_1	2.8e-10	CL0018