Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0440 ATGGACGATGCATATGCCAGATCTATTCCCGAGGTCCTCGATTTCTTTGGAGTGGACCCAACAAAAGGTCTTTCTGATACCCAGGTGGCACAACATGCTAGACTTCATGGTACAAACGGGGCTCCCTTTTGGAAATTAGTCTTGAAACAATTTGATGATTTGCTTGTGAAGATATTAATTGCAGCTGCATTTATATCTTTCATTCTGGCTTTAATAAACGGAGAAACAGGCTTAATGGCATTTCTGGAGCCTTCTGTTATTCTATTGATATTGGCCGCAAATGCAGCTGTTGGGGTGATTACAGAAACAAATGCTGAAAAAGCTCTCGAGGAGCTACGGGCCTATCAAGCTGATATTGCGACTGTTCTTCGAAATGGTTGTTTTTCCATACTCCCAGCAACTGAAATTGTTCCTGGCGATATTGTGGAAGTTTCTGTGGGGTGCAAAATTCCTGCTGATATGAGGATGATTGAAATGCTGAGTAATCAAGTACGTGTTGATCAGGCTATTCTTACAGGTGAGAGCTACTCTGTGGAAAAAGAGCTTAAAACTACCACAACAACAAGGGCTGTATACCAAGATAAAACAAATATATTGTTCTCGGGAACGGTTGTGGTTGCTGGTAGGGCAAGAGCAATTGTGGTGGGAGTTGGTCCTAACACTGCCATGGGCAGCATTCGTGATTCAATGTTGCAAACTGAAGATGAGGTGACACCATTGAAGAAGAAGCTGGATGATTTTGGTACCTTTTTGGCCAAGGTTATTGCAGGGATTTGCATATTGGTGTGGATTGTAAATATTGGTCACTTTCGCGACCCTTCTCATGGTGGTTTCTTGCTTGGTGCAATTCATTATTTTAAGATTGCAGTTGCTCTGGCAGTTGCAGCAATTCCTGAAGGGCTTCCTGCTGTTGTTACAACGTGTTTGGCTCTTGGAACAAAGCGGATGGCTAGGCTGAATGCTATTGTCCGGTCTTTGCCATCTGTTGAGACATTGGGCTGCACCACTGTAATTTGTAGTGACAAAACTGGAACTCTGACAACCAATATGATGTCTGTCGCAAAGGTATGTGTGGTTCACTCTGTGAAATATAGTCCTGAAGTTACTGAATACAGTGTTAGTGGAACAACATACGCACCTGAAGGCATAATCTTTGACAGTTCAGGGATACAGCTTGACTTTCCAGCTCAGCTGCCATGCCTTCTTCACTTAGCAATGTGTTCTGCCCTTTGCAATGAATCCACCCTGCAGTATAACCCTGATAAAGGGAAGTATGAAAAAATTGGTGAGTCAACTGAAGTGGCACTTCGTGTCCTAGCAGAAAAGGTTGGTTTGCCTGGTTTTGATTCTATGCCATCAGCCTTGAATATGTTGAGCAAGCATGAACGTGCGTCTTACTGTAATCATTATTGGGAGGAACAATTTAGAAAGATTGACCTTTTGGATTTTTCTCGGGATCGGAAAATGATGAGTGTCCTTTGCAGCCGAAATCAGTTGCATGTGTTGTTCTCAAAGGGCGCGCCAGAGAGTATATTGTCTCGATGTACGACCATCTTGTGCAATGATGATGGTTCCATTGTGCCACTTACTGCTGATACCAGAGCAGAGCTAGACTCAAGGTTTCACAGTTTTGCAGGAACAGAAACATTAAGATGCCTAGCTTTAGCCCTCAAATGGATGCCCTCAGGCCAACAGCGTCTTTCCTATGATGATGAAAAAGATCTAACTTTTATTGGGTTGGTTGGTATGCTTGATCCACCAAGAGATGAAGTAAGAAATGCCATGATTTCATGCATGACTGCTGGCATACGTGTTATAGTTGTCACTGGGGATAACAAGTCCACTGCTGAGTCACTTTGCCGCAAGATAGGTGCTTTTGACCATTTGTTAGAATTTACTGAACATTCTTACACTGCTTCTGAGTTTGAAGAACTTCCAGCTATGCAGCAAACTCTGGCTTTGCAACGTATGGCACTTTTTACCAGGGTTGAGCCTTCTCATAAAAGGATGCTGGTTGAAGCATTACAGCACCAGAATGAAGTGGTTGCTATGACTGGTGATGGTGTCAATGATGCACCTGCACTGAAGAAGGCAGATATAGGAATTGCTATGGGTTCAGGAACAGCTGTTGCCAAGAGTGCATCAGACATGGTGCTGGCTGATGACAACTTTGCTTCAATTGTTGCGGCTGTAGCAGAGGGAAGGGCCATATACAACAATACGAAGCAGTTTATTAGATACATGATCTCTTCCAATATTGGTGAAGTAGTCTGTATATTTGTGGCAGCTGTGCTTGGAATACCTGATACCCTTGCCCCTGTCCAGCTGCTTTGGGTCAATCTGGTCACTGACGGATTGCCTGCCACTGCTATTGGATTTAATAAGCAAGACTCTGATGTGATGAAGGTCAAACCTCGTAAGGTGAATGAAGCAGTTGTTACTGGGTGGCTGTTCTTCCGTTATCTAGTAATTGGAGCTTATGTTGGCCTTGCCACTGTTGCTGGCTTTATTTGGTGGTTTGTTTACTCTGATAGTGGCCCTAAACTACCATATACTGAACTAATGAATTTTGAAACTTGCCCAACTAGGGAGACTGCTTATCCTTGCAGCATATTTGATGATCGACATCCATCCACTGTAGCAATGACAGTGCTTGTCGTTGTTGAGATGTTCAATGCTTTGAACAATCTTAGTGAGAATCAATCTCTTATGGTTATTCCTCCATGGAGTAACTTGTGGCTTGTTGGTTCAATCATTCTTACTATGCTTCTTCACATATTAATTTTGTATGTGAACCCACTCTCAGTTCTTTTCTCTGTAACACCGTTATCCTGGACTGACTGGATGATTGTCCTCTATCTTTCGTTACCTGTTATATTCATTGATGAGGTGTTAAAGTTCTTCTCCAGACATCCTATTGGTCCGAGGTTCAGATTATGGTTCAGGAGGCCTGATTTACTTCCAAAAAGAGAATCGCGCGATAAGTAA 2988 0.429 MDDAYARSIPEVLDFFGVDPTKGLSDTQVAQHARLHGTNGAPFWKLVLKQFDDLLVKILIAAAFISFILALINGETGLMAFLEPSVILLILAANAAVGVITETNAEKALEELRAYQADIATVLRNGCFSILPATEIVPGDIVEVSVGCKIPADMRMIEMLSNQVRVDQAILTGESYSVEKELKTTTTTRAVYQDKTNILFSGTVVVAGRARAIVVGVGPNTAMGSIRDSMLQTEDEVTPLKKKLDDFGTFLAKVIAGICILVWIVNIGHFRDPSHGGFLLGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVAKVCVVHSVKYSPEVTEYSVSGTTYAPEGIIFDSSGIQLDFPAQLPCLLHLAMCSALCNESTLQYNPDKGKYEKIGESTEVALRVLAEKVGLPGFDSMPSALNMLSKHERASYCNHYWEEQFRKIDLLDFSRDRKMMSVLCSRNQLHVLFSKGAPESILSRCTTILCNDDGSIVPLTADTRAELDSRFHSFAGTETLRCLALALKWMPSGQQRLSYDDEKDLTFIGLVGMLDPPRDEVRNAMISCMTAGIRVIVVTGDNKSTAESLCRKIGAFDHLLEFTEHSYTASEFEELPAMQQTLALQRMALFTRVEPSHKRMLVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFASIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPDTLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMKVKPRKVNEAVVTGWLFFRYLVIGAYVGLATVAGFIWWFVYSDSGPKLPYTELMNFETCPTRETAYPCSIFDDRHPSTVAMTVLVVVEMFNALNNLSENQSLMVIPPWSNLWLVGSIILTMLLHILILYVNPLSVLFSVTPLSWTDWMIVLYLSLPVIFIDEVLKFFSRHPIGPRFRLWFRRPDLLPKRESRDK 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0440 995 Gene3D - 22 231 - -
Glsi10g0440 995 PANTHER CALCIUM-TRANSPORTING ATPASE 8 971 - -
Glsi10g0440 995 FunFam Sodium/potassium-transporting ATPase subunit alpha 578 724 - -
Glsi10g0440 995 NCBIfam HAD-IC family P-type ATPase 656 770 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi10g0440 995 NCBIfam HAD-IC family P-type ATPase 86 360 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi10g0440 995 Pfam haloacid dehalogenase-like hydrolase 577 699 - -
Glsi10g0440 995 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 346 583 IPR023299 GO:0000166
Glsi10g0440 995 ProSitePatterns E1-E2 ATPases phosphorylation site. 341 347 IPR018303 -
Glsi10g0440 995 PRINTS P-type cation-transporting ATPase superfamily signature 601 611 - -
Glsi10g0440 995 PRINTS P-type cation-transporting ATPase superfamily signature 579 590 - -
Glsi10g0440 995 PRINTS P-type cation-transporting ATPase superfamily signature 167 181 - -
Glsi10g0440 995 PRINTS P-type cation-transporting ATPase superfamily signature 708 720 - -
Glsi10g0440 995 PRINTS P-type cation-transporting ATPase superfamily signature 339 353 - -
Glsi10g0440 995 PRINTS P-type cation-transporting ATPase superfamily signature 685 704 - -
Glsi10g0440 995 Gene3D - 336 729 IPR023214 -
Glsi10g0440 995 FunFam Calcium-transporting ATPase 349 586 - -
Glsi10g0440 995 SFLD p-type atpase 320 737 IPR044492 -
Glsi10g0440 995 Coils Coil 105 125 - -
Glsi10g0440 995 SUPERFAMILY Calcium ATPase, transduction domain A 118 229 IPR008250 -
Glsi10g0440 995 CDD P-type_ATPase_SERCA 5 970 - -
Glsi10g0440 995 FunFam Calcium-transporting ATPase, putative 205 335 - -
Glsi10g0440 995 Pfam Cation transporter/ATPase, N-terminus 6 66 IPR004014 -
Glsi10g0440 995 FunFam Calcium-transporting ATPase 106 231 - -
Glsi10g0440 995 SUPERFAMILY HAD-like 572 733 IPR036412 -
Glsi10g0440 995 Pfam E1-E2 ATPase 116 318 - -
Glsi10g0440 995 SMART Cation_ATPase_N_a_2 3 71 IPR004014 -
Glsi10g0440 995 SUPERFAMILY Calcium ATPase, transmembrane domain M 2 971 IPR023298 -
Glsi10g0440 995 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 681 974 - -
Glsi10g0440 995 PRINTS H+-transporting ATPase (proton pump) signature 716 741 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi10g0440 995 PRINTS H+-transporting ATPase (proton pump) signature 685 701 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi10g0440 995 PRINTS H+-transporting ATPase (proton pump) signature 657 673 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi10g0440 995 SFLD Haloacid Dehalogenase 320 737 - -
Glsi10g0440 995 Pfam Cation transporting ATPase, C-terminus 769 968 IPR006068 -
Glsi10g0440 995 Gene3D - 349 586 IPR023299 GO:0000166
Glsi10g0440 995 Pfam Cation transport ATPase (P-type) 409 518 - -
Glsi10g0440 995 Gene3D - 49 970 - -
Glsi10g0440 995 NCBIfam calcium-translocating P-type ATPase, SERCA-type 47 840 IPR005782 GO:0005388|GO:0006816|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0440 Glsi-ChrGlsi10 2797087 2827429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0440 1 995 Primary Pumps ATPases(2) AT1G10130 83.716 0.0 1712