Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0425 ATGTTGTGTGCTTGCTCCGGGGAGCAATTCAAATTTGAAGAGCCGCCACAGTCACCGGAGTCCCTCGCAACCAGGGATTTCTCCGCCAGCGGGCTCTCTTCAAGGACTGGGGATTGGGATGTGAAATTTGATGATACCCAAGTAGACGAAGTTGAATCTACTCTCAAAGAAGCTCTCTCCTTAAACTACGATGAAGCTAGGGCTTTGTTGGGGAGGCTTGAATACCAAAGAAGGAACTTCGATGCTGCCCTTCATGTATTTCAGGGGATAGACATTAAGGGTTTGACCCCAAGGATGATTAGGGCTATTGCTGAGGCAACTAAGCAAACAAAAACACGTCCTAAGGCCGATAATGTGCTTCCGACTGTCATGTCAATGCATTCGGTTAGCCTGCTTCTTGAGGCAATTTTGCTTAAAGCAAAATCATTGGAGGAACTTGGGCGCTACATTGATGCTGCAAAGGAGTGTAGAATAATTCTGGATACGATAGAATCTGCTCTACCTAGTGGTATGCCTGAAGGTATTGGCGAAGATTGTAAATTGCAGGAGATGTTCCACAGAGCATTGGAGTTGCTTCCAAACCTATGGACCAAGGCAGGCTTTCTAGATGAAGCTATCACTGCTTATCGGCGGGCTCTGGTCAAGCCATGGAACATGGAGCCACGAAGGTTGGCTGGTGTTCAAAAAGATTTAGCTGCCATGCTGCTATATGGTGGTGTTGATATAACCCTTCCCCCTCAGTTGCAAGTGTGGGGTCCAAAAACACCAGAGAATAGCATTGAAGAAGCTATACTTTTGTTATTAATACTTATGAGGAAGGTGGCACTTCAGGAAATTGACTGGGATAACGAAATAATGGATCATCTTACATTTGCACTTTCAATTACTGGGATGTTTGAATCATTGGCAGATCACGTGGAGCAGATCCTTCCAGGTATCTATAATCGTGCTGAGAGGTGGTACCTTCTTGCTCTTTGTTATAATGCTGCAGGACAGAATGAAGCAGCATTGAACCTTTTAAGGAGGGCTTGTGGAAGTTCGGAAGCAAAGCATAGACCCCATTTTCCTTCCTTTTTATTCGGAGCAAAACTGTGTTCCCAAGAACCCAAACATGCCTCGGAAGGCATTAACTTCTCACGTAAAGTGATTGATATAGCCAAGAATCAAAATGAACATTTTTTGGCTCAAGGTCACAGATTTCTTGGTGTCTGCTATGGGGCTGCGGCTAGAATTTCTGTACTGGATTCTGAAAGAATAATATGTCAAAGAGAGTCTTTGACCTCTTTAAACCATGCGGCTGTAATTCCAAATTGCGACCCAGAAGTGATATTCAGCCTTGGATTGGAAAATGCAATTCAAAGAAATCTGGATGCTGCTTATGAGAATGCAGTGATGTACTCAGATATGATTGTTGGCAGCTCAGGAAGAGGTTGGCAGCTGTTAGCACTCATAGTTTCTGCACAGCAGCGGTTTAAGGATGCTGAAACTATAATTGATTTTGCCTTAGATGAGGCTGGGAGGATGGATCAGTTAGCACTTTTAAGATTGAAAGCCGTGCTTCAAATTGCTCAGCAGCAACCTAAGCAAGCAATAGAGACCTACAGAATCTTGTTAGCACTAATTCAAGCAAAAAAAGATCTTTGGCTTCAATATAAGAACTTCGATCAAGCAAACACATTGAGGCATGAGGCATTAACAGAAAGGAACTTGGAAATGGAAGCCTGGCAGGATTTGGCAACCATTTATGCAGATCTCGGTTCTTTTCCTGATGCAAAAACTTGTATCGACAAAGCCCAGCTGATAGAATTTTTTTCTCCCAGAAGTTGGCATAATACAGGGACATTGTTTGAAGCGCAATCATTATACAAGGAGGCCTTTGTTTCTTTCTCAATCTCATTGTCGATAGAACCAGATTACATTCCCAGTATCATTTCAACTGCAGAATTGTTGCTGAAACTTGGTAAGCAATCGCTTCCAATTGCAAGAAGCTTTTTAATGAACGCTTTGCGATTAGAACCCACAAACCATGATGCATGGTTCAACCTTGGATTGGTTTCAAAAATGGAAGGTTCATTACAACAAGCAGCAGATTTCTTCCAAGCTGCATATGAGCTAAAGCTTTCAGCGCCAGTGCAAAGATTTGAGTGA 2148 0.4292 MLCACSGEQFKFEEPPQSPESLATRDFSASGLSSRTGDWDVKFDDTQVDEVESTLKEALSLNYDEARALLGRLEYQRRNFDAALHVFQGIDIKGLTPRMIRAIAEATKQTKTRPKADNVLPTVMSMHSVSLLLEAILLKAKSLEELGRYIDAAKECRIILDTIESALPSGMPEGIGEDCKLQEMFHRALELLPNLWTKAGFLDEAITAYRRALVKPWNMEPRRLAGVQKDLAAMLLYGGVDITLPPQLQVWGPKTPENSIEEAILLLLILMRKVALQEIDWDNEIMDHLTFALSITGMFESLADHVEQILPGIYNRAERWYLLALCYNAAGQNEAALNLLRRACGSSEAKHRPHFPSFLFGAKLCSQEPKHASEGINFSRKVIDIAKNQNEHFLAQGHRFLGVCYGAAARISVLDSERIICQRESLTSLNHAAVIPNCDPEVIFSLGLENAIQRNLDAAYENAVMYSDMIVGSSGRGWQLLALIVSAQQRFKDAETIIDFALDEAGRMDQLALLRLKAVLQIAQQQPKQAIETYRILLALIQAKKDLWLQYKNFDQANTLRHEALTERNLEMEAWQDLATIYADLGSFPDAKTCIDKAQLIEFFSPRSWHNTGTLFEAQSLYKEAFVSFSISLSIEPDYIPSIISTAELLLKLGKQSLPIARSFLMNALRLEPTNHDAWFNLGLVSKMEGSLQQAADFFQAAYELKLSAPVQRFE 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0425 715 Gene3D Tetratricopeptide repeat domain 33 239 IPR011990 GO:0005515
Glsi10g0425 715 PANTHER PROTEIN NPG1 1 715 IPR043376 -
Glsi10g0425 715 Gene3D Tetratricopeptide repeat domain 546 710 IPR011990 GO:0005515
Glsi10g0425 715 Pfam Tetratricopeptide repeat 317 347 IPR019734 GO:0005515
Glsi10g0425 715 SMART tpr_5 606 639 IPR019734 GO:0005515
Glsi10g0425 715 SMART tpr_5 317 350 IPR019734 GO:0005515
Glsi10g0425 715 SMART tpr_5 475 508 IPR019734 GO:0005515
Glsi10g0425 715 SMART tpr_5 511 544 IPR019734 GO:0005515
Glsi10g0425 715 SMART tpr_5 572 605 IPR019734 GO:0005515
Glsi10g0425 715 SMART tpr_5 676 709 IPR019734 GO:0005515
Glsi10g0425 715 SUPERFAMILY TPR-like 69 347 IPR011990 GO:0005515
Glsi10g0425 715 ProSiteProfiles TPR repeat profile. 606 639 IPR019734 GO:0005515
Glsi10g0425 715 SUPERFAMILY TPR-like 429 599 IPR011990 GO:0005515
Glsi10g0425 715 Gene3D Tetratricopeptide repeat domain 258 545 IPR011990 GO:0005515
Glsi10g0425 715 ProSiteProfiles TPR repeat profile. 676 709 IPR019734 GO:0005515
Glsi10g0425 715 SUPERFAMILY TPR-like 548 706 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0425 Glsi-ChrGlsi10 2726266 2729130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0425 1 714 Calmodulin-binding Proteins AT1G27460 59.749 0.0 876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0425 10 2726266 2729130 Glsi08g1815 08 12861706 12863451 CCT
Glsi10g0425 10 2726266 2729130 Glsi10g0425 10 2726266 2729130 ECH