Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0422 ATGGCAGCCTCAGATGCAATTCTCCAATACGCAAGAGTTGGTGGCAAAGAAAAAAGTTTGACTCTTGACATCAGAAATCGTCTTCTGGATATGGGGTGGAAAGTCCAGTGTTCGCAAGATACTGCTCCACTTAGGTACTGTTATATGTCGCCGTCCGGCAAGACCTACTATTCTCTTAAGAAACTCTGTCAAGATTTGGCCTCAAATTCTCTAATCTACGAACGTAATCATTTGCTAGATTCTTCTCAGCATAATGACGGAGGTTTATTGCTTGGCGAACAAGCAAAGGAGGGCAAAACCAAAATCCCTATTCAGGATTCTGTCTCTGTAGCTGATGTACTTGTCGTTGAATCCGAATATTGCCCTCAAGCAGTGATTGACTGGTATACGCTTACGGGACAAGAGGACTATATGAGCGAGGTCACGAAAACTAGCTTGTCCGATTTGTCGTTAAAAGCGAAGAAGCATCTTTCTGCTCTGGGGTGGTCATTCTGGTTTGCTGATAAGAAAGGAAGGCAGGAACTGCGTTATAAGTCTCCTCACAGTGGCAAGAATTATTACTCTCTCAGAATGGCCTGCAAAAGCTGTATAGAAGAGTCTAAAACTGAGTTCCCTTCATCTACAATTCCATTTTCTGCAGAAACAGGCTCTGTACAAACAAGTATGAAGAAGTCGAGACGAGGCAGGAAAAGAAAAAGAGAGCCATTAGGCGATGAATTCAGTTCCATAGGTGGTGAAAGAGGTAGGTATCCACGGTCAAGCAAGAGAGCGAGGACAGCGGTAGCTTCTGACTCCATACAGCGCAATCCTCGAACAGCTATCTCTTGGTTGATAGACAGAAAAGTGGTATTAGCAGGGGCAGAAGTACATTGCCGTAATAAAAGTGAGGTGGTGAAGAAAGGGAAGATCTTTGGTAATGGAATCAAGTGTGACTGTTGTTGTGAGGTGTTCACTCTCAGTAGATTTGAAGTTCATGCTGGGAGTACAAAGCACAGACCAGCTGCCAATATCTTCTTGGAAGATGGCAGGTCATTGTTGGATTGCCAAAAGGTAGCCTTGCGAAATATTGGAGAGAGAAGCTTGAATTCACAATATAGGAGGAGGGTTTTAACGAAGGATCAGGTTGAAAATGACAACATTTGTTCTGTTTGTCAGTACGGGGGCGAAATCATTCTGTGTGATGGATGTCCATCCTCATTTCACCAGAGCTGTCTGGGTTTATCGCAACTTCCCAATGGTGATTGGTTCTGCCCATCATGCTGTTGCAAAATATGCAGCCAGAGCATATACAAACAAGATTCTGATGATTGCGTGGATAATAGGGTTCTCTTTTGCGACCAATGTGAGCGTAAATATCACACTGGGTGCCTAAAGAGTAGGGAATGTACCAAGCTGAAAAACCATCCTAGCGAAAATTGGTTCTGTGGCGGAGACTGTGAAAATATATTTTTGGGTCTAAAGAATCTGTTGGGAAAACCATTTTCTGTGAGTGAAGATAATCTGACCTGGACATTGCTTAAGACCAGGGAAACCGAAAACTCTGAAGCTGATACTAGTGAGATTGAACGGAAGCTGAATATAGCTCTTGAAGTAATGCATGAGTGCTTCGAGCCACTCATTGAAGTTCACTCCGGGAGGGACCTTGTTGAAGATGTCATTTTCAGTAAAGGTTCAGAACTTAGTCGTTTGAACTTTCGAGGTTTCTACACTGCAATTCTGGAGAGGAACGACGAAGTTATTAGCGTTGCCACTGTAAGGATTTATGGGAAAGAAGTTGCAGAAGTGCCTCTTATAGCGACCAAATTCCAGTTTCGAAGACTCGGAATGTGTCGTATTTTGATGAATGAGCTTGAGAAGAAGCTGAATGAGTTACGTATAGAGAGGATGGTTTTGCCTGCTGTTCATCATGTGCTGAGCACCTGGACAAATTCCTTCGGCTTTAAAAGGATGACAGATTCTGAGAGGTCACAATTTCTCGATTATACTTTTTTGGTCTTCCAAGGCACCTTCATGTGCCAGAAACTATTAAAGAAACCTGCAATGGAATCAGGAGAAGTCTGGCCTAAACCTGGTCTTGATCTGCAGCACAACCAACTTATATCTTGCATCACTGAGACTTGTTACTAG 2127 0.4316 MAASDAILQYARVGGKEKSLTLDIRNRLLDMGWKVQCSQDTAPLRYCYMSPSGKTYYSLKKLCQDLASNSLIYERNHLLDSSQHNDGGLLLGEQAKEGKTKIPIQDSVSVADVLVVESEYCPQAVIDWYTLTGQEDYMSEVTKTSLSDLSLKAKKHLSALGWSFWFADKKGRQELRYKSPHSGKNYYSLRMACKSCIEESKTEFPSSTIPFSAETGSVQTSMKKSRRGRKRKREPLGDEFSSIGGERGRYPRSSKRARTAVASDSIQRNPRTAISWLIDRKVVLAGAEVHCRNKSEVVKKGKIFGNGIKCDCCCEVFTLSRFEVHAGSTKHRPAANIFLEDGRSLLDCQKVALRNIGERSLNSQYRRRVLTKDQVENDNICSVCQYGGEIILCDGCPSSFHQSCLGLSQLPNGDWFCPSCCCKICSQSIYKQDSDDCVDNRVLFCDQCERKYHTGCLKSRECTKLKNHPSENWFCGGDCENIFLGLKNLLGKPFSVSEDNLTWTLLKTRETENSEADTSEIERKLNIALEVMHECFEPLIEVHSGRDLVEDVIFSKGSELSRLNFRGFYTAILERNDEVISVATVRIYGKEVAEVPLIATKFQFRRLGMCRILMNELEKKLNELRIERMVLPAVHHVLSTWTNSFGFKRMTDSERSQFLDYTFLVFQGTFMCQKLLKKPAMESGEVWPKPGLDLQHNQLISCITETCY 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0422 708 Pfam Tify domain binding domain 301 350 IPR032308 -
Glsi10g0422 708 MobiDBLite consensus disorder prediction 206 264 - -
Glsi10g0422 708 MobiDBLite consensus disorder prediction 206 222 - -
Glsi10g0422 708 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 516 676 IPR000182 GO:0016747
Glsi10g0422 708 PANTHER PHD FINGER PROTEIN 12 117 681 IPR042163 GO:0003714|GO:0045892
Glsi10g0422 708 Gene3D - 513 679 - -
Glsi10g0422 708 ProSiteProfiles Zinc finger PHD-type profile. 378 423 IPR019787 -
Glsi10g0422 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 422 482 IPR013083 -
Glsi10g0422 708 SMART PHD_3 380 421 IPR001965 -
Glsi10g0422 708 SMART PHD_3 422 480 IPR001965 -
Glsi10g0422 708 Pfam PHD-finger 380 421 IPR019787 -
Glsi10g0422 708 CDD NAT_SF 572 631 - -
Glsi10g0422 708 SUPERFAMILY FYVE/PHD zinc finger 359 422 IPR011011 -
Glsi10g0422 708 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 546 657 IPR016181 -
Glsi10g0422 708 Coils Coil 607 627 - -
Glsi10g0422 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 369 421 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0422 Glsi-ChrGlsi10 2715385 2717511 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0422 218 624 PHD Transcription Factor Family AT5G58610 47.242 8.14e-117 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Glsi10g0422 TDBD 7.2e-22 No_clan