Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0419 ATGGAGAGTTACCTGAATGAGAACTTTGGGGATGTGAAACCCAAGAACTCATCGGAGGAGGCGCTTCAGCGATGGAGAAACCTCTGTTGGCTTGTGAAGAACCGTAAGAGGAGGTTTCGCTTCACTGCTAATCTTTCCAAGCGATTTGAAGCCGAGGCTATCAGACGCTCTAATCAGGAGAAGTTCAGAGTTGCAGTCTTGGTTTCACAAGCTGCACTTCAATTTATCCATGGTCTAAATTTGTCAAGTGAGTACACTGTACCAGAAGGGGTTAAAGCTGCTGGTTTTGAAATTTGTGCTGATGAATTGGGATCAATTGTTGAAGGCCGTGATGTGAAGAAGTTGAAAATTCATGGTGGAGTTGAGGGTATTGCAAACAAGCTCACTACCTCTATAGATGATGGGATATCAACATCTGAGCAAATACTAAATCAGAGAAAAGAAATTTATGGAATTAATAAATTCACTGAAACCCCAATCCGGGGGTTTTGGATTTTTGTATGGGAAGCCCTTCAAGATACGACCCTTATGATTCTTGCTGTTTGTGCCTTAGTCTCTTTGATGGTTGGCATAATAATGGAAGGATGGCCCAAGGGCGCGCAGGATGGAATTGGTATCGTTGCAAGCATATTGCTCGTAGTGTTTGTCACTGCCACAAGTGATTACAGACAATCATTGCAGTTTAAGGATCTAGATAGGGAGAAGAAAAAAATTACAGTTCAGGTCACTCGAAACGGATGTAGACAGAAGATTTCAATATATGATTTACTTCCTGGTGATGTTGTCCACCTAAATATTGGTGATCAAGTCCCTGCTGACGGACTTTTTGTGTCAGGTTTCTCTGTGTTGATAAACGAATCAAGTTTGACTGGAGAGAGTGAACCAGTGAATGTTAATGCTCTTAATCCTTTTCTTCTTTCTGGAACTAAAGTTCAGGATGGATCTTGCAGGATGTTTGTGACTACTGTTGGAATGAGAACCCAGTGGGGAAAACTAATGGCCACTCTAAGTGAAGGGGGAGATGATGAAACTCCCTTGCAGGTAAAACTCAATGGCGTAGCTACCATTATTGGGAAAATAGGCCTTTTTTTCGCTGTTGTGACTTTTGCTGTTTTGGTCCAAGGACTAGTTACCCGCAAGCTGCAAGAAGGGTCACAGTGGACATGGTCTGGTGATAATGCCAGGGAAATTTTGGAATTCTTTGCTGTTGCTGTTACTATTGTTGTTGTAGCAGTTCCTGAAGGTTTACCCTTAGCTGTAACATTGAGCCTTGCTTTTGCAATGAAAAAGATGATGAATGATAAGGCACTTGTCCGTCATTTGGCTGCTTGCGAGACAATGGGATCCGCCACTACTATTTGTAGTGACAAGACCGGCACTCTAACCACTAACCATATGACTGTTGTGAAAACTTGCATATGTAGGAAGATTAAGGAAGCAGGGAGCTCTAAGATCTCTTCTGATTTCTTGTCTGATCTTCCTGATTCTGCTCTGAAAATTCTATTTGAATCAATTTTTAACAACACTGGAGGAGAAGTTGTCAAAGACAAAAATGAGAAGATTGAGATTCTGGGAACACCGACTGAGAGTGCACTTTTGGAATTTGGGCTATCACTTGGTGGAGATTTCCTCGAGGAGAGACAAGCGTCAAAAATTGTGAAAGTTGAACCCTTTAATTCTCTAAAGAAGCGCATGGGGGTGGTTCTACAGCTTCCTGATGGTAGCTTTAGAGCACACTGCAAAGGTGCTTCTGAAATAATTCTTGCTGCATGCGACAGGGCTATAGACTCAAACGGCAAGGTTGTTCCCCTTCATGAAGAATCCATCAATCAGTTGAAGGATACAATTGAAAAATTTGCCAGTGAAGCTCTCCGAACCCTTTGCCTTGCTTACATGGAGATTGGAAGTGAATACTCTGTTGAAACTCCTATTCCTATTAGCGGATACACATGTATAGGAATTGTGGGAATTAAAGATCCAGTTCGTCCTGGTGTCCGGGAGTCTGTCGCCATTTGCAGGTCAGCTGGAATTACTGTCAGGATGGTTACTGGAGACAACATACATACTGCAAAGGCTATTGCTAGAGAATGTGGAATTCTAACTGATGGTATAGCGATTGAAGGCCCTGAGTTCCGTGAGAAGACTGAGGAGGAATTGCATGATTTAATTCCAAATATTCAGGTAATGGCACGATCTTCACCTATGGATAAGCATACGCTTGTGAAACACTTAAGGACAACATTTGAAGAAGTTGTTGCAGTTACTGGTGACGGTACAAATGATGCTCCTGCACTTCATGAAGCAGATATTGGACTTGCAATGGGCATTGCTGGAACTGAGGTAGCAAAAGAAAGTGCAGATGTGATAATACTAGATGATAACTTCTCCACTATTGTGACTGTGGCCAAATGGGGCCGTTCAGTCTACATAAACATACAGAAATTTGTGCAGTTCCAGCTAACTGTAAATGTTGTTGCTATGATAGTCAACTTCTCTTCTGCCTGTTTGACCGGAAATGCTCCCCTCACTGCGGTCCAGCTTCTATGGGTCAACATGATCATGGACACTTTAGGAGCACTTGCACTAGCCACTGAACCCCCCAATGACGACTTGATGAAAAGACCGCCTGTTGGTAGGAAAGGAAACTTCATCAGTAACGTGATGTGGAGGAATATCTTGGGGCAATCTTTATATCAGTTTGTTATAATCTGGTTCCTCCAGACAAAAGGAAAAGTAGTTTTTCATCTTGATGGTCCAGACTCTGATTTGATATTAAACACTCTCATTTTCAACTCATTTGTATTCTGTCAGGTTTTCAATGAGATCAGTTCCAGAGAGATGGTGAAGATAAATGTCTTTGAGGGCATACTAAAGAACTATGTGTTTGTGGCTGTCCTAACTTGCACTATCCTCTTTCAAATCATAATCATCGAATTCTTGGGCACGTATGCAAACACGACTCCCCTTAGTTTAAAGCTGTGGCTTGGAAGTGTTTTTTTTGGATTACTTGGCATGCCAATCGCCGTAGGTTTAAAGCTGATCCCTGTGGGATCTGTCTGA 3060 0.4219 MESYLNENFGDVKPKNSSEEALQRWRNLCWLVKNRKRRFRFTANLSKRFEAEAIRRSNQEKFRVAVLVSQAALQFIHGLNLSSEYTVPEGVKAAGFEICADELGSIVEGRDVKKLKIHGGVEGIANKLTTSIDDGISTSEQILNQRKEIYGINKFTETPIRGFWIFVWEALQDTTLMILAVCALVSLMVGIIMEGWPKGAQDGIGIVASILLVVFVTATSDYRQSLQFKDLDREKKKITVQVTRNGCRQKISIYDLLPGDVVHLNIGDQVPADGLFVSGFSVLINESSLTGESEPVNVNALNPFLLSGTKVQDGSCRMFVTTVGMRTQWGKLMATLSEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVQGLVTRKLQEGSQWTWSGDNAREILEFFAVAVTIVVVAVPEGLPLAVTLSLAFAMKKMMNDKALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKTCICRKIKEAGSSKISSDFLSDLPDSALKILFESIFNNTGGEVVKDKNEKIEILGTPTESALLEFGLSLGGDFLEERQASKIVKVEPFNSLKKRMGVVLQLPDGSFRAHCKGASEIILAACDRAIDSNGKVVPLHEESINQLKDTIEKFASEALRTLCLAYMEIGSEYSVETPIPISGYTCIGIVGIKDPVRPGVRESVAICRSAGITVRMVTGDNIHTAKAIARECGILTDGIAIEGPEFREKTEEELHDLIPNIQVMARSSPMDKHTLVKHLRTTFEEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVAMIVNFSSACLTGNAPLTAVQLLWVNMIMDTLGALALATEPPNDDLMKRPPVGRKGNFISNVMWRNILGQSLYQFVIIWFLQTKGKVVFHLDGPDSDLILNTLIFNSFVFCQVFNEISSREMVKINVFEGILKNYVFVAVLTCTILFQIIIIEFLGTYANTTPLSLKLWLGSVFFGLLGMPIAVGLKLIPVGSV 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0419 1019 Pfam Cation transporting ATPase, C-terminus 840 1014 IPR006068 -
Glsi10g0419 1019 FunFam Calcium-transporting ATPase 17 77 - -
Glsi10g0419 1019 FunFam Calcium-transporting ATPase 217 337 - -
Glsi10g0419 1019 Gene3D - 169 1005 - -
Glsi10g0419 1019 FunFam Calcium-transporting ATPase 464 660 - -
Glsi10g0419 1019 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
Glsi10g0419 1019 Gene3D - 140 337 - -
Glsi10g0419 1019 SUPERFAMILY Calcium ATPase, transduction domain A 238 334 IPR008250 -
Glsi10g0419 1019 PRINTS H+-transporting ATPase (proton pump) signature 612 630 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi10g0419 1019 PRINTS H+-transporting ATPase (proton pump) signature 787 812 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi10g0419 1019 PRINTS H+-transporting ATPase (proton pump) signature 755 771 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi10g0419 1019 PRINTS P-type cation-transporting ATPase superfamily signature 779 791 - -
Glsi10g0419 1019 PRINTS P-type cation-transporting ATPase superfamily signature 755 774 - -
Glsi10g0419 1019 PRINTS P-type cation-transporting ATPase superfamily signature 675 685 - -
Glsi10g0419 1019 PRINTS P-type cation-transporting ATPase superfamily signature 454 468 - -
Glsi10g0419 1019 PRINTS P-type cation-transporting ATPase superfamily signature 653 664 - -
Glsi10g0419 1019 PRINTS P-type cation-transporting ATPase superfamily signature 285 299 - -
Glsi10g0419 1019 FunFam Calcium-transporting ATPase 772 1018 - -
Glsi10g0419 1019 Pfam haloacid dehalogenase-like hydrolase 652 769 - -
Glsi10g0419 1019 Gene3D - 17 77 - -
Glsi10g0419 1019 SUPERFAMILY HAD-like 452 860 IPR036412 -
Glsi10g0419 1019 Pfam Cation transporter/ATPase, N-terminus 119 186 IPR004014 -
Glsi10g0419 1019 NCBIfam HAD-IC family P-type ATPase 390 478 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi10g0419 1019 NCBIfam HAD-IC family P-type ATPase 726 836 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Glsi10g0419 1019 NCBIfam calcium-translocating P-type ATPase, PMCA-type 113 1016 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Glsi10g0419 1019 Gene3D - 451 800 IPR023214 -
Glsi10g0419 1019 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 460 665 IPR023299 GO:0000166
Glsi10g0419 1019 Pfam E1-E2 ATPase 237 432 - -
Glsi10g0419 1019 CDD P-type_ATPase_Ca_PMCA-like 143 888 - -
Glsi10g0419 1019 SFLD Haloacid Dehalogenase 436 807 - -
Glsi10g0419 1019 PANTHER CATION TRANSPORTING ATPASE 78 1016 - -
Glsi10g0419 1019 ProSitePatterns E1-E2 ATPases phosphorylation site. 456 462 IPR018303 -
Glsi10g0419 1019 SUPERFAMILY Calcium ATPase, transmembrane domain M 118 1015 IPR023298 -
Glsi10g0419 1019 SMART Cation_ATPase_N_a_2 117 191 IPR004014 -
Glsi10g0419 1019 Pfam Cation transport ATPase (P-type) 515 592 - -
Glsi10g0419 1019 SFLD p-type atpase 436 807 IPR044492 -
Glsi10g0419 1019 FunFam Calcium-transporting ATPase 649 800 - -
Glsi10g0419 1019 Gene3D - 464 660 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0419 Glsi-ChrGlsi10 2694669 2700604 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0419 1 1018 Primary Pumps ATPases AT1G27770 82.139 0.0 1703