Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0416 ATGGGAACCGAGAGTGCAGCTAATTATACATACATGGGACGGAGTATCGGCGAATTGAGTATCAACGATAATTCCTCTTCTGCTTTCAGCGACTGCAACAGTGACAGATCTGGTGAATTTCCTACGGCTTCTTCCGAAAGCCGACGCCTCCTGATTGCTTGTGCTTCGGAGAATTCTGATGAATTTATCAATCACCTGGTATCCGATCTTCAATCCTGTTCGATTGACGAACAAAAGCAAGCCGCCATGGAGATCAGACTACTGGCCAAAAACAAGCCAGAAAATCGCCTTAAAATTGCCAGAGCTGGCGCGATTAAGCCGTTGATTTCGCTTATGTCTTCTTCTGACCTTCAGCTGCAAGAGTATGGCGTTACGGCGATTTTGAATCTCTCACTATGCGACGAGAACAAGGAGTTTATAGCTTCGTCGGGAGCGATAAAGCCTCTGGTTCGAGCCCTCAAGACAGGGACATCAACGGCTAGAGAGAACGCAGCATGTGCTTTGCTTCGTCTCTCGCAAGTAGAAGACAACAAGATCGCAATTGGAAGGTCGGGAGCCATTCCCCTCCTAGTGAAACTTTTAGAGAGCGGCGGTTTCCGTGGGAAGAAGGACGCCTCGACGGCGCTGTATGCGCTCTGTTCCATAAAGGAGAACAAGATCAGGGCCGTCCAAGCGGGAATTATGAAGCCGTTAGTGGAATTAATGGCTGATTTTGGATCAAACATGGTGGATAAGTCAGCGTACGTGTTGAGCGTGCTGTTATCGGTACCGGAGGCGAGGACAGCGTTGGTGGAGGAAGGAGGTATTCCGGTGTTAGTGGAAATCATAGAGGTGGGGTCGCAGAGACAGAAGGAAATAGCGGTGGTTATACTGCTACAGATTTGCGAGGACAGCGTGGCCTACCGTACTATGGTGGCTCGCGAAGGAGCGATTCCTCCGTTAGTCGCTTTGTCGCAGTCCGGCGCCAATCGCTCCAAGCAAAAGGCGGAGACACTAATAGAGCTTCTACGGCAACCAAGACCCGGCAACGCCGCTGCCCGTGCATCGGAGGTCTCACCTTAA 1062 0.5075 MGTESAANYTYMGRSIGELSINDNSSSAFSDCNSDRSGEFPTASSESRRLLIACASENSDEFINHLVSDLQSCSIDEQKQAAMEIRLLAKNKPENRLKIARAGAIKPLISLMSSSDLQLQEYGVTAILNLSLCDENKEFIASSGAIKPLVRALKTGTSTARENAACALLRLSQVEDNKIAIGRSGAIPLLVKLLESGGFRGKKDASTALYALCSIKENKIRAVQAGIMKPLVELMADFGSNMVDKSAYVLSVLLSVPEARTALVEEGGIPVLVEIIEVGSQRQKEIAVVILLQICEDSVAYRTMVAREGAIPPLVALSQSGANRSKQKAETLIELLRQPRPGNAAARASEVSP 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0416 353 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 103 145 IPR000225 GO:0005515
Glsi10g0416 353 FunFam U-box domain-containing protein 4 47 352 - -
Glsi10g0416 353 SMART arm_5 256 296 IPR000225 GO:0005515
Glsi10g0416 353 SMART arm_5 215 255 IPR000225 GO:0005515
Glsi10g0416 353 SMART arm_5 174 214 IPR000225 GO:0005515
Glsi10g0416 353 SMART arm_5 298 338 IPR000225 GO:0005515
Glsi10g0416 353 SMART arm_5 133 173 IPR000225 GO:0005515
Glsi10g0416 353 SMART arm_5 92 132 IPR000225 GO:0005515
Glsi10g0416 353 Pfam Armadillo/beta-catenin-like repeat 134 172 IPR000225 GO:0005515
Glsi10g0416 353 Pfam Armadillo/beta-catenin-like repeat 93 131 IPR000225 GO:0005515
Glsi10g0416 353 Pfam Armadillo/beta-catenin-like repeat 176 213 IPR000225 GO:0005515
Glsi10g0416 353 SUPERFAMILY ARM repeat 58 334 IPR016024 -
Glsi10g0416 353 Gene3D - 42 349 IPR011989 -
Glsi10g0416 353 PANTHER U BOX DOMAIN-CONTAINING 62 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0416 Glsi-ChrGlsi10 2680463 2682000 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0416 44 345 U-box Gene Family AT2G23140 49.007 4.56e-86 271