Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0411 ATGGGGAAACTACCCTCGGGCCTCACAACGAAGCTAAAAAACAAAAACAAAAAAAAGTGCTGTAAAATTTGTTTTTGCTATTATTACCTTTCAGAGGATAGGGTCAAATTTACTATAATGTTATATTTTAGAACCCTTTGTAGTTTGTTATCTATTGGATTACTGAGAATTTTGAGACAATGGATTAACCTTAACCAAAGATATCACAGCTGGGTTCTTGGCTCTGTCGTAGATATTGTCCTGCTGGCTCCTGATGCATATATGCTGTCTCATTTTACTGCTACCAACCAACTATTTACAGTGGTATCAAACCACAAAAGAATAGCCATAATTTTCCTTAGGCTTCTAACTAAACAGAAAAGAATGGAACCACTTGGATCCTTCCCTGATGGAGAAACGGGTTGCTTCCATGGAACGGTTGCCACAGAAGAGCATGATTACTCTCCCCAGTTTCTTGGTCAAAACTCACTTCTGCTTGGGGAACATGATGGAATGATTATTGGAATAGAACCTACATTTTACTCTGCTCCTGAAGCTGAGGAGAATGAGAGTATGTTTTATACTTTAGATGCTTTCAACTCAAATTTGCAGTATATTTCTCAGGAAGGTAGTTTCAGTAGTAGTTTTAGCGGCGATACTTTCTTCATTGCCAATCCGGGTTATACAAACTACTGTGTCAGTGATCGTGATCATGCACTAGTAAATGATGCCTGCATGTCCATGAATGTTTGCACGATGGATGAGAAAAACACTGGCTCTTTTGTCCCATCACTTAGTGACGTTTTAATGAAAGAGACTGTTAGCTTCAATGAAGATGGGAGTAAAGACAGATTGGAGAATTCTAATCAAATTCAGGCAGAATCCACTGTTTTTCCAGCCAAACAGTTGCATCTCAAAAGGAAGTTTGATGTGCCAGAACTGGAGGCTCTGGCAAAAGATGAAATAAACATAAACTCGTCTGAGAATCAGAAGAAGAAACCTCGTGTTTCAAAAGATGCGCAAAATTGTAAGAAGAATGCACGGCCAAAGAAGAATCAGAAAGTTGCCGTAAATGGTTACGAGGCAGAAGAGAGTAATACAGGATTTGATGGACATTGCTCTAGCAGTTACAGCTTAGAGGACGATAGTGCTTCTCAGGAAAATAGTGGAGGAGCTAGTTCGGGGTCTAAATCTCCGGTGGCTCACAACTTAAATGGGAAGACTAGAGCCAGTAGGGGATCAGCAACAGATCCCCAGAGCCTTTATGCAAGGAAAAGAAGAGAGAGAATAAACGAGCGACTGAGAATCCTACAGAATCTTGTCCCCAACGGAACAAAGGTTGATATAAGCACAATGCTTGAAGAGGCAGTCCAGTACGTGAAATTTTTGCAGCTCCAAATCAAGCTTTTAAGCTCTGATGATATGTGGATGTACGCTCCAATTGCTTATAATGGAATCGACATTGGACTGAATCTCAGCACCTCAATGAGCTTGTGA 1476 0.4038 MGKLPSGLTTKLKNKNKKKCCKICFCYYYLSEDRVKFTIMLYFRTLCSLLSIGLLRILRQWINLNQRYHSWVLGSVVDIVLLAPDAYMLSHFTATNQLFTVVSNHKRIAIIFLRLLTKQKRMEPLGSFPDGETGCFHGTVATEEHDYSPQFLGQNSLLLGEHDGMIIGIEPTFYSAPEAEENESMFYTLDAFNSNLQYISQEGSFSSSFSGDTFFIANPGYTNYCVSDRDHALVNDACMSMNVCTMDEKNTGSFVPSLSDVLMKETVSFNEDGSKDRLENSNQIQAESTVFPAKQLHLKRKFDVPELEALAKDEININSSENQKKKPRVSKDAQNCKKNARPKKNQKVAVNGYEAEESNTGFDGHCSSSYSLEDDSASQENSGGASSGSKSPVAHNLNGKTRASRGSATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDMWMYAPIAYNGIDIGLNLSTSMSL 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0411 491 FunFam Basic helix-loop-helix transcription factor 408 465 - -
Glsi10g0411 491 CDD bHLH_AtIND_like 408 470 - -
Glsi10g0411 491 Gene3D - 409 472 IPR036638 GO:0046983
Glsi10g0411 491 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 407 456 IPR011598 GO:0046983
Glsi10g0411 491 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 285 479 - -
Glsi10g0411 491 Pfam Helix-loop-helix DNA-binding domain 417 457 IPR011598 GO:0046983
Glsi10g0411 491 MobiDBLite consensus disorder prediction 318 339 - -
Glsi10g0411 491 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 407 473 IPR036638 GO:0046983
Glsi10g0411 491 SMART finulus 413 462 IPR011598 GO:0046983
Glsi10g0411 491 MobiDBLite consensus disorder prediction 361 411 - -
Glsi10g0411 491 MobiDBLite consensus disorder prediction 318 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0411 Glsi-ChrGlsi10 2657686 2662909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0411 122 483 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 38.760 1.77e-58 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi10g0411 HLH 2.2e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0411 10 2657686 2662909 Glsi10g0411 10 2657686 2662909 ECH