Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi10g0408 | ATGGCTATGGAAGCTCTCAAATCACCTACCACCGCTACCCCATCCTTCCCCTTCCAAGACCCCAACATCCACTCCCTCGAGCCATGGACTAAGCGTAAGCGTTCCAAGCGCCCCCGTCTCGATCATCCTTCTTGCACCGAGGAAGAGTATCTCGCTCTCTGCCTTATCATGCTGGCTCGCGGTGGCTCCACTGCCTCACACCGCCATAGCCCCCCTGCTGTATCTGAGTCGGCGCGGCAATCCACCCCAGATCCCACTGCCCCAACCAAACTCAGTTACAAATGCTCTGTCTGCAACAAAGCTTTCTCCTCTTACCAAGCTCTCGGAGGACACAAGGCGAGTCACCGGAAGCTCGCCGGGGAAGATCAACCCACCTCCTCGGCCGTCACCAGTACTTCTGCAAACACCACCACCACTGCATCCAACGGTGGGGGTAAAACCCACGAGTGTTCCATCTGCCACAAGTCCTTTCCCTCAGGACAGGCCTTGGGCGGACACAAGCGCTGCCACTACGAGGGCGGTGCGGGTGCCTCTGGCGGGGGCAGCAGCGCTATCACCGCCTCCGAGGGGGTTGGCTCCACCCATACCATCAGCCACACCCACAGAGACTTCGATCTGAACCTTCCCGCTTTTCCGGAGTTTTCACCCAAGTTCTTCGTGTCCGGGGACGACGAGGTCGAGAGCCCTTTGCCAGGCAAAAAACCGCGCCTTCTGATACCACCCAAAATGGAAATCCCTCAAGACCACTGA | 750 | 0.5853 | MAMEALKSPTTATPSFPFQDPNIHSLEPWTKRKRSKRPRLDHPSCTEEEYLALCLIMLARGGSTASHRHSPPAVSESARQSTPDPTAPTKLSYKCSVCNKAFSSYQALGGHKASHRKLAGEDQPTSSAVTSTSANTTTTASNGGGKTHECSICHKSFPSGQALGGHKRCHYEGGAGASGGGSSAITASEGVGSTHTISHTHRDFDLNLPAFPEFSPKFFVSGDDEVESPLPGKKPRLLIPPKMEIPQDH | 249 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi10g0408 | 249 | Gene3D | Classic Zinc Finger | 91 | 170 | - | - | |
| Glsi10g0408 | 249 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 150 | 170 | IPR013087 | - | |
| Glsi10g0408 | 249 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
| Glsi10g0408 | 249 | MobiDBLite | consensus disorder prediction | 175 | 197 | - | - | |
| Glsi10g0408 | 249 | MobiDBLite | consensus disorder prediction | 224 | 249 | - | - | |
| Glsi10g0408 | 249 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 148 | 170 | IPR013087 | - | |
| Glsi10g0408 | 249 | MobiDBLite | consensus disorder prediction | 181 | 195 | - | - | |
| Glsi10g0408 | 249 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 95 | 115 | IPR013087 | - | |
| Glsi10g0408 | 249 | SMART | c2h2final6 | 148 | 170 | IPR013087 | - | |
| Glsi10g0408 | 249 | SMART | c2h2final6 | 93 | 115 | IPR013087 | - | |
| Glsi10g0408 | 249 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 93 | 115 | IPR013087 | - | |
| Glsi10g0408 | 249 | SUPERFAMILY | beta-beta-alpha zinc fingers | 93 | 170 | IPR036236 | - | |
| Glsi10g0408 | 249 | MobiDBLite | consensus disorder prediction | 64 | 89 | - | - | |
| Glsi10g0408 | 249 | Pfam | C2H2-type zinc finger | 148 | 171 | - | - | |
| Glsi10g0408 | 249 | Pfam | C2H2-type zinc finger | 93 | 117 | - | - | |
| Glsi10g0408 | 249 | PANTHER | C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED | 32 | 212 | IPR044653 | GO:0003700 | |
| Glsi10g0408 | 249 | MobiDBLite | consensus disorder prediction | 113 | 147 | - | - | |
| Glsi10g0408 | 249 | MobiDBLite | consensus disorder prediction | 120 | 146 | - | - | |
| Glsi10g0408 | 249 | MobiDBLite | consensus disorder prediction | 68 | 89 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi10g0408 | Glsi-ChrGlsi10 | 2645259 | 2646008 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi10g0408 | 1 | 245 | C2H2 Transcription Factor Family | AT1G27730 | 52.734 | 2.49e-72 | 219 |
Transcription factors information