Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0384 ATGGGAAGCTCCAAGACAATTACTGGGGTTACCGATAATTCTGCTACGGAGTCGGGCACCAGTAGCAGGACCGACACTGACAATGATGTCGGCCTCCACTCCGATTCCTCTCCCTACGCCGTAGGAGAGAAGGTCCTTGCCTACCATAATGCTCGAATCTATGAAGCTAAGGTGTTGCAAACCGAGTACAAGCTGAAAGATAGGAGGTTTTTTGTTCACTATCTTGGTTGGAAAAAAAGTTGGGATGAATGGGTCGGTGTAGATCGTTTGATGAAACACACTGAAGAAAATTTACAGAAAAAAATGGCGATTAATGAGAAACATGGAAATGACAAGAACACAAAAGCAGCCCGTGCATCGCAGTTTAAATCCAAAAGTTCTAATGTTGCAAGAGGCAAGAAGCGAATGAATGAAATTCTCATCAAGGAAAAAGCTGACGTACATTCTGGAAAGATTGTCAGTATTCAGATCCCTCCAACACTAAAGAAGCAATTAGTTGATGATTGTGAATTTATTACCCATATGGGCAAGCTTGTTAAACTTCCTCGTACTCCAAATGTGAACAACTTATTGAAGAAGTATCTTGATTATAAATTGAAGAAAGATGGCTCGATAGCTGATTCAGTTGAAGAAATTTTTAAAGGGTTGTGTTGTTACTTTGACAAAGCATTGCCAGTGATGCTCTTGTATAAGAATGAGCGGCAGCAATACCAAGAAGCATGCCCTGATGATATCACTCCTTCTACAATATATGGTGCAGAACATCTGTTACGTCTCTTTGCAAATATGAAACTCGTTGAATTGAGAGTGTGGAAGGAGCTTGAGAAATCCTCTCCACTGGATTGCTTCCAAATCCAACCAATTAGGCATTCAGACACCGCCTATCCTCACTTGTTTGTCTTGTTCCTCTCTTTTGTCAACAGCTCCTATTATCTTCTTTGCTGGGTTCACATAAAGCCTACTGCTGCTCCATTCCTGTCTATGGGGTTCACCAATTTTGGCCTATCCAAGCTACTAAACCGCAATGACTTCAACAATTCAAAGTTCTCAAGAATAAGGGGCACCCGAGGTTACATGGCTCCTGAGTGGGTTTTCAATTTGCCAATAACCTCCAAGGTAGATGTTTATAGCTATGGAATTGTGGTCTTGGAATTGTTGACTGGAAAGAGCCCGACAATGGGTGACCAAGATGTTGATGATAGAGAAGGGAGGCAACATAGGCTGCTGGCACGGGTGAAGGGGAAAAAGACCAAAGGATCCTCAAAGGGTTCTTGGTTGAAGCAGATAATGGACCCCATGATGGAAGGAAATCTCGACACTGATAAGATGGAAATTTTGGTCGAAGTGGCTTTACAATGTGTAGAGGAGGACAGAGATGCAAGGCCCACCATGAGACAAGTTGTTGAGATGCTACAAAGTCATGAAAATGATTCGCATTGA 1440 0.4236 MGSSKTITGVTDNSATESGTSSRTDTDNDVGLHSDSSPYAVGEKVLAYHNARIYEAKVLQTEYKLKDRRFFVHYLGWKKSWDEWVGVDRLMKHTEENLQKKMAINEKHGNDKNTKAARASQFKSKSSNVARGKKRMNEILIKEKADVHSGKIVSIQIPPTLKKQLVDDCEFITHMGKLVKLPRTPNVNNLLKKYLDYKLKKDGSIADSVEEIFKGLCCYFDKALPVMLLYKNERQQYQEACPDDITPSTIYGAEHLLRLFANMKLVELRVWKELEKSSPLDCFQIQPIRHSDTAYPHLFVLFLSFVNSSYYLLCWVHIKPTAAPFLSMGFTNFGLSKLLNRNDFNNSKFSRIRGTRGYMAPEWVFNLPITSKVDVYSYGIVVLELLTGKSPTMGDQDVDDREGRQHRLLARVKGKKTKGSSKGSWLKQIMDPMMEGNLDTDKMEILVEVALQCVEEDRDARPTMRQVVEMLQSHENDSH 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0384 479 SUPERFAMILY Chromo domain-like 38 173 IPR016197 -
Glsi10g0384 479 SMART serkin_6 246 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0384 479 Pfam MRG 149 263 IPR026541 -
Glsi10g0384 479 Gene3D MRG domain 151 281 IPR038217 -
Glsi10g0384 479 Gene3D - 23 121 - -
Glsi10g0384 479 SUPERFAMILY Protein kinase-like (PK-like) 331 473 IPR011009 -
Glsi10g0384 479 CDD CBD_MSL3_like 43 99 - -
Glsi10g0384 479 Pfam Protein kinase domain 331 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0384 479 Gene3D Transferase(Phosphotransferase) domain 1 318 479 - -
Glsi10g0384 479 PANTHER MORTALITY FACTOR 4-LIKE PROTEIN 37 267 IPR008676 GO:0005634|GO:0006325|GO:0006355
Glsi10g0384 479 MobiDBLite consensus disorder prediction 1 33 - -
Glsi10g0384 479 ProSiteProfiles MRG domain profile. 149 330 - -
Glsi10g0384 479 ProSiteProfiles Protein kinase domain profile. 125 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0384 479 Pfam RNA binding activity-knot of a chromodomain 41 90 IPR025995 -
Glsi10g0384 479 MobiDBLite consensus disorder prediction 105 127 - -
Glsi10g0384 479 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0384 Glsi-ChrGlsi10 2517004 2526325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0384 331 475 Trihelix Transcription Factor Family AT5G38560 33.103 8.42e-18 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Glsi10g0384 Pkinase 8e-17 CL0016