Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0379 ATGTTGCGGAAAATCATGGTAAAGAGGACCCACTCAGGTTACGAATCCCTAGGGTACGATCCTGTTGCGCCCAAGTGGGATATAGCTGGCAACCCAATTTATCGTCCTACAGTTACGTCCGTTAAAGTTTCGAGCTACGTTTCATATTATGTTGCCACATATCAGAAGGAGGAAGAGGCAGAGGGTTTTCGTGGGAACGACTGCCACGTGGCATTCAGGAAGTATGTGAGGCCGTTAGAAGTTGTGAGAATAGAGCACCCCGCTGCTTTCATTTCCATGGCGTCCCCAAAGAAAGACCTCGATCGCATTAAAGGCCCGTGGAGTCCAGAAGAAGATGAAACCTTACATACACTCGTTCAGAGCTACGGCCCTAGAAACTGGTCTCTCATCAGTAAGTCCATTCCCGGTCGATCCGGCAAGTCCTGCCGCTTGCGCTGGTGCAACCAGCTCTCTCCGGACGTCCAGCACAGGCCTTTTACTCCCGACGAGGACGACACCATCATCAGAGCACACGCCAGGTTTGGCAACAAGTGGGCTACCATCGCTCGCCTGCTCCACGGTCGCACAGACAACGCCATCAAAAACCATTGGAATTCCACTCTCAAGAGGAAATGCTCCGCCATCACCGATCCTTTCAATACCGACGCCAATGACCACCACCCTCTCAAAAGATCCGCCAGTGTTGGTGCCCCCACTACCGCCCCCGGTTTGTACTTGAACCCGAGTAGCCCGTCCGGCTCCGATTTGAGCGATTCTAGTTTGCCCGCAATGTCCCCGACGCAGGTTTACAGACCCTTTGCCGCGAACGAAGTCCTGGTTCCCTCCGCCAATCAACTGGAAACGACGCCTTCGGCCGATGATCCACCGACATGTCTCAGCTTATCGCTGCCCGGATCCGATTCATGGGAGGCATCCAACCACGGGTCCGGATCGAATCAGACTGCCAGCCCCTCACAGGTGAAACAGCCCCCGGTACAGCCAAGTCCACGACCGCCAGCGCCTCCAGCACCGGCTGTGGGAGGATCGGCGCAGCAAGTGCTTTTGCCAGGGCAGAGCAGTCAGCGATATGATCAGTTTGGTCATGAGAAGCAGTTCTTCAACGCCGAGTTCTTGGCGGTGATGCAGGAGATGGTTAGGAGGGAAGTGAGGAATTACATGTCTGGGATGGAGCAGAATGGTCTGTGTATGCAGAGCGAAGCATTTAGAAACGCTGTGGTGAAGAGTATTGGAATTAGCAGGGTCGAGTAG 1248 0.5433 MLRKIMVKRTHSGYESLGYDPVAPKWDIAGNPIYRPTVTSVKVSSYVSYYVATYQKEEEAEGFRGNDCHVAFRKYVRPLEVVRIEHPAAFISMASPKKDLDRIKGPWSPEEDETLHTLVQSYGPRNWSLISKSIPGRSGKSCRLRWCNQLSPDVQHRPFTPDEDDTIIRAHARFGNKWATIARLLHGRTDNAIKNHWNSTLKRKCSAITDPFNTDANDHHPLKRSASVGAPTTAPGLYLNPSSPSGSDLSDSSLPAMSPTQVYRPFAANEVLVPSANQLETTPSADDPPTCLSLSLPGSDSWEASNHGSGSNQTASPSQVKQPPVQPSPRPPAPPAPAVGGSAQQVLLPGQSSQRYDQFGHEKQFFNAEFLAVMQEMVRREVRNYMSGMEQNGLCMQSEAFRNAVVKSIGISRVE 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0379 415 CDD SANT 158 201 IPR001005 -
Glsi10g0379 415 MobiDBLite consensus disorder prediction 236 256 - -
Glsi10g0379 415 Pfam Myb-like DNA-binding domain 158 200 IPR001005 -
Glsi10g0379 415 Pfam Myb-like DNA-binding domain 104 150 IPR001005 -
Glsi10g0379 415 ProSiteProfiles Myb-like domain profile. 99 150 IPR001005 -
Glsi10g0379 415 MobiDBLite consensus disorder prediction 279 343 - -
Glsi10g0379 415 MobiDBLite consensus disorder prediction 279 321 - -
Glsi10g0379 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 155 205 IPR017930 -
Glsi10g0379 415 SUPERFAMILY Homeodomain-like 101 197 IPR009057 -
Glsi10g0379 415 Gene3D - 157 226 - -
Glsi10g0379 415 CDD SANT 106 148 IPR001005 -
Glsi10g0379 415 SMART sant 155 203 IPR001005 -
Glsi10g0379 415 SMART sant 103 152 IPR001005 -
Glsi10g0379 415 FunFam Transcription factor MYB44 158 204 - -
Glsi10g0379 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 99 154 IPR017930 -
Glsi10g0379 415 PANTHER MYB PROTEIN-RELATED 104 309 - -
Glsi10g0379 415 Gene3D - 103 155 - -
Glsi10g0379 415 FunFam MYB transcription factor 104 155 - -
Glsi10g0379 415 ProSiteProfiles Myb-like domain profile. 151 201 IPR001005 -
Glsi10g0379 415 MobiDBLite consensus disorder prediction 322 338 - -
Glsi10g0379 415 MobiDBLite consensus disorder prediction 215 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0379 Glsi-ChrGlsi10 2459939 2463215 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0379 93 415 MYB Transcription Factor Family AT4G37260 45.326 4.10e-91 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi10g0379 Myb_DNA-binding 1e-15 CL0123