Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0375 ATGGCTCATCATCATCAAGAAGACAATCCAAGATTCCATCTTGATGCTTTGTACTGTTCAGAAGAGCATTGGGAGGAAGAAGTCGGCCAGCACTATTGCCAACATGAATTAGAACTAGTAGATGACTGTTACCTTACTAATACTAGTCAAATAAACTCTCCCCTGGTCTTGCTAGAACAGGACCTGTTCTGGGATGATCAGGAGCTGACCTCTCTGCTCGCCAGAGAGCAACAAAACCAACTCCACACAAACCTACAAAGTGACCCGCTGCTGGCCGGAGGCCGCAGAGAAGGCGTAGAGTGGATTCTCAAAGTGAATGCTCACTACTCTTTCTCTGCTCTCACCGCTGTTCTTGCCGTCAACTACCTCGACAGGTTCCTGTTCAGCTTCCAACTTCAGAATGGGAAGCCATGGATGACCCAACTTGCTGCCGTCACCTGTCTCTCCCTCGCTGCCAAGGTGGAGGAGACCCAAGTGCCCCTTTTACTAGACCTCCAAGTGGAGGACAGTAGATACGTGTTCGAAGCCAAAACGATAAAAAGGATGGAGATTTTGGTACTTTCCACGCTTGGATGGAAGATGAATCCGGTAACCCCACTCTCGTTTCTTGATTATATCACACGAAGACTCGGGTTAAAGGACTATCTCGTCTGGGAGTTCCTGAGTAGGTGCGAAGGCATTCTTCTCTCCGTCATTGCGGATTCCAGGTTTACGGGTTATGTTCCGTCAGTGGTGGCGACTGCCACAATGATGCACGTTGTGAATAGTGTGGAAGCCAGCCTAGGAGATGAATACCAAAATCAGCTGAGGGGGATTCTTGGAATCGACAAGGACAAGGTAGAGGAATGCTACAAGCTGATATTGGAAAGTTGGTCCGGCTACCACGGCAGGCAAACCAAGAAACGCAATTTTGGTTGTGTTCCCGGTAGCCCCAATGGCGTGATGGATGCGTCATTTAGCTGTGATAGCTCGAACGACTCTTGGGCGGTAGCTGCTTCTGTTTCGTCTTCGCCGGAGCCTCTGTCCAAGAAGAGCAGAACTGGAGATCAGCTTCTACTAAACCATCCAAATTTAGATTTTCTCAGCATTCCTCGCTAG 1098 0.49 MAHHHQEDNPRFHLDALYCSEEHWEEEVGQHYCQHELELVDDCYLTNTSQINSPLVLLEQDLFWDDQELTSLLAREQQNQLHTNLQSDPLLAGGRREGVEWILKVNAHYSFSALTAVLAVNYLDRFLFSFQLQNGKPWMTQLAAVTCLSLAAKVEETQVPLLLDLQVEDSRYVFEAKTIKRMEILVLSTLGWKMNPVTPLSFLDYITRRLGLKDYLVWEFLSRCEGILLSVIADSRFTGYVPSVVATATMMHVVNSVEASLGDEYQNQLRGILGIDKDKVEECYKLILESWSGYHGRQTKKRNFGCVPGSPNGVMDASFSCDSSNDSWAVAASVSSSPEPLSKKSRTGDQLLLNHPNLDFLSIPR 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0375 365 Pfam Cyclin, N-terminal domain 89 195 IPR006671 -
Glsi10g0375 365 SMART cyclin_7 100 188 IPR013763 -
Glsi10g0375 365 PANTHER CYCLINS 72 289 IPR039361 -
Glsi10g0375 365 Gene3D - 82 195 - -
Glsi10g0375 365 CDD CYCLIN_AtCycD-like_rpt1 95 192 - -
Glsi10g0375 365 Gene3D - 72 285 - -
Glsi10g0375 365 SUPERFAMILY Cyclin-like 63 195 IPR036915 -
Glsi10g0375 365 FunFam D3-type cyclin 88 195 - -
Glsi10g0375 365 SUPERFAMILY Cyclin-like 198 297 IPR036915 -
Glsi10g0375 365 Pfam Cyclin, C-terminal domain 197 296 IPR004367 -
Glsi10g0375 365 CDD CYCLIN_AtCycD-like_rpt2 197 287 - -
Glsi10g0375 365 SMART Cyclin_C_2 197 323 IPR004367 -
Glsi10g0375 365 FunFam CYCLIN D32 196 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0375 Glsi-ChrGlsi10 2441707 2443038 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0375 5 289 Core Cell Cycle Gene Families AT4G34160 53.333 6.11e-101 301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0375 10 2441707 2443038 Glsi05g1640 05 64635268 64636743 ECH
Glsi10g0375 10 2441707 2443038 Glsi09g0423 09 2910568 2912017 ECH
Glsi10g0375 10 2441707 2443038 Glsi10g0375 10 2441707 2443038 ECH