Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0354 ATGCAAGGTCAGAGGGGTACAGTTGGTTCCTTCCCTGAAACCTTAGAATTTGATTGTGGATCGACATCAAGTAATGCTACTGTGGATCAGCAGATTTGCTGGAACAATATGCGGAGTCCTGCAGATAACAATATACCTGAGTATTTACTTCCACCGGGTGATGTGAACCCATCGTATATGAATTCTATGAACCATGAATGGCAGAACTCGAGTGGATGGAGCTTAGGTGAGCCAAGTTCTGGTAATACACAGAGTGAGATTATTAATAATCAACAGAAAAGAGAAATTGGATGGTCATCTCCAATGAGTGCTGGTGCTGTAGCTGGTCCAAGAATAGAAGGAAGGCGCTTTGAACCAACTACTGTTCTTTCAGCAGACAATGTCAATACAAGTCCTATGTGTATGCCCAACTCCAATTCTCATGTAGTGTCACCAAATCTCAACTTAAATGCAGGTTTGGTGGATGGGGGTAGTGATAATGGTCAGCATTTGGAGCATCCTGACTTGCACAAGTCTAATGGATTAGTAAATGAGCGTATTCCACCTAGCATTGGTTCTGGTCCTTTTCTGCTTCCTTCCGGAAATAACAGCTTCTTGGTAGAAGGTACTGATGGTAGGTCAGGTTGTTCTCTGGATGAGCGTCGTGTGTCTTGTAAAAGAAAGGCTGTTGAAGGAAATGTTGGACCATCTTCGGACAGTGGAAGTTCTAGCTACAGCCAGCATACAGAAAGTAGTGCTTGGCATACTTTTCCTACTCAGGATAATGCTGGGAGCAGTTTAAGCAGATCTGCTTCATCTGAGCCGGTAAATGCTAGACTTGGCCTGGGTATGGGGGGTGAAGCCTCTGAAATCCTTCCTGATTCAAATGTTGGAGTGAGCTCAGAAAGCTTCCACAGGAATTTCCGTTTGAGGACAAATCCTTCAAACCAACAAGATTCCATTCCTCCCTCTGCATTCTCAGCTGGGAATTTGATTAGGCATTCTAGTGTTTCATCGTCTCCTATGTCACAGAGTTTTCATCCTGCTGATAATTCTCTGGACTTGAGGTCATCACCCGCAGTAGATAATATAATTCCTCCAAGACAGCCCCTTGTGATCCACGTTCCTGGTTTACCAAGGAATTTGCAATCATTTAGATGGAGTGGTGGTTCTAGCTCAAGAAACAGCCATTCATCAAGCTCAATTATTTGTGCAGACAGGGATAATCTACCACATGAAGAAGGAAGCTCAAGAAGTATGTCTAGAAACATTTTAGAACCCCAGGTGCTTGTACCTGCAACTGATTTAAGAAATTTGGTTCGAAATCCAACAATTAGATCTTCAAGTAGTGCAAATTTAAGTATGTCAGGAAACGTCGCTTCTTCATCGCGGGCTGGATCGAATTCAGCCATCAGTCAATCATCTGCCTCAACGTGGGTTTCTCGTCCTAATCCTCCACAGTATCCACGTAGATTATCTGAATATGTTCGTCGATCATTGTTTTCCCCTCCTTCTGAGGCTGTTGGAACTCCAAGTCCTAGCAATAACTATTCTTTGCATTCTGGTCCTACTGCTTCATCTGAAGTGAGGGTGCCATCATCTGGATCTGGTAGCCAAGGACATCATCAGTCGCACCCAAGATCTTCTTCGTGGATGGAGAGGCAAGGTGATAGTGAATTTGGAATTCCCTATTCATTACGAAGTTTGGCTGCTGCCAGTGAAGGAAACAGTAGCAGACTTGTATCTGAGCTCCGCAGTGTTTTGGGCCTCATGCGTAGGGGTGGGGGCCTGCGATTTGAGGATGTTATGATCCTTGACCAATCAGTCTTTTCTGGAATGGCTGATATTCATGATCGACACAGGGATATGCGTCTTGACGTGGATAACATGTCTTATGAGGAGTTATTGGCTCTGGAAGAGCGCATTGGGAATGTGAGTACTGGATTGAGTGAGGATACCATATCGAAACTTTTAAAACAGAAGAAATTTTCAGTTGAAACAGGATCTCAGCTTGAGGCAGAACCTTGCTGTGTTTGTCAGGAGGAGTATAAGGACGGAGATGATATTGGAACGCTTGATTGCGGGCATGATTACCACAGTGACTGTATTAAACAGTGGCTAATGCACAAGAATCTTTGCCCCATTTGTAAGACAACGGGCTTGGCATCGTGA 2151 0.4417 MQGQRGTVGSFPETLEFDCGSTSSNATVDQQICWNNMRSPADNNIPEYLLPPGDVNPSYMNSMNHEWQNSSGWSLGEPSSGNTQSEIINNQQKREIGWSSPMSAGAVAGPRIEGRRFEPTTVLSADNVNTSPMCMPNSNSHVVSPNLNLNAGLVDGGSDNGQHLEHPDLHKSNGLVNERIPPSIGSGPFLLPSGNNSFLVEGTDGRSGCSLDERRVSCKRKAVEGNVGPSSDSGSSSYSQHTESSAWHTFPTQDNAGSSLSRSASSEPVNARLGLGMGGEASEILPDSNVGVSSESFHRNFRLRTNPSNQQDSIPPSAFSAGNLIRHSSVSSSPMSQSFHPADNSLDLRSSPAVDNIIPPRQPLVIHVPGLPRNLQSFRWSGGSSSRNSHSSSSIICADRDNLPHEEGSSRSMSRNILEPQVLVPATDLRNLVRNPTIRSSSSANLSMSGNVASSSRAGSNSAISQSSASTWVSRPNPPQYPRRLSEYVRRSLFSPPSEAVGTPSPSNNYSLHSGPTASSEVRVPSSGSGSQGHHQSHPRSSSWMERQGDSEFGIPYSLRSLAAASEGNSSRLVSELRSVLGLMRRGGGLRFEDVMILDQSVFSGMADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLSEDTISKLLKQKKFSVETGSQLEAEPCCVCQEEYKDGDDIGTLDCGHDYHSDCIKQWLMHKNLCPICKTTGLAS 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0354 716 MobiDBLite consensus disorder prediction 379 398 - -
Glsi10g0354 716 MobiDBLite consensus disorder prediction 434 477 - -
Glsi10g0354 716 MobiDBLite consensus disorder prediction 228 268 - -
Glsi10g0354 716 ProSiteProfiles Zinc finger RING-type profile. 669 710 IPR001841 -
Glsi10g0354 716 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 214 714 IPR045191 GO:0061630
Glsi10g0354 716 MobiDBLite consensus disorder prediction 328 354 - -
Glsi10g0354 716 MobiDBLite consensus disorder prediction 498 548 - -
Glsi10g0354 716 MobiDBLite consensus disorder prediction 495 548 - -
Glsi10g0354 716 SMART ring_2 669 709 IPR001841 -
Glsi10g0354 716 MobiDBLite consensus disorder prediction 328 351 - -
Glsi10g0354 716 FunFam E3 ubiquitin-protein ligase MBR2 637 714 - -
Glsi10g0354 716 MobiDBLite consensus disorder prediction 222 274 - -
Glsi10g0354 716 Pfam Ring finger domain 669 710 IPR001841 -
Glsi10g0354 716 SUPERFAMILY RING/U-box 658 712 - -
Glsi10g0354 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 632 713 IPR013083 -
Glsi10g0354 716 MobiDBLite consensus disorder prediction 434 480 - -
Glsi10g0354 716 MobiDBLite consensus disorder prediction 379 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0354 Glsi-ChrGlsi10 2309928 2313897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0354 1 716 C3H Transcription Factor Family AT2G15530 33.645 3.03e-80 268
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0354 10 2309928 2313897 Glsi08g1864 08 13197832 13203259 CCT
Glsi10g0354 10 2309928 2313897 Glsi10g0354 10 2309928 2313897 ECH