Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0352 ATGGCGGGTATGTACGGAACACCTCCATTTTTGGTCACCGGCATGCCTTCTGATTCCGAAGACTTCTCTACCATCTTCAGCCAGCTCCTCCATAGCTCGTCCTCCTCTTGCATGATCTCCAAACCCAAAACCTTACCGCCTCCGCGGCTTTCTCAGCAAGTTGGGACCGCCGGTTTTTCCCGGTTGGAGGACACCCACAGGTTTGGCCAATTGGATACCGATTCTGGGTCGGACAACCCCCTCAAAATTGGAAAGTTGGTTGCTTCTTCGGATGCAGTTGCTGCTTCTTCCTCTAATTTCAATTTTTCTGATCCCTATACTTACGTTCCGGCTGATGTGAAAGAGACTACAGGAAACGAGCTTTTTCTGACTGGTGTCGAGGACTCTGATGAAAATACCTCCTTGAAAGAACATAAGATTTCGCCGGAGAATGATCCCGGTGATTTCATTTGTCCTGTTGAGAAGAATGCCGAGGCGTCAGAGGGAAAGTCAGTCCCATCACGTACTTCGTCAAAGAGGAGTAGAGCTGCAGAGGTTCATAATTTGTCTGAAAAGAGAAGGAGGAGTAGGATTAACGAGAAAATGAAGGCCTTGCAGAACTTAATTCCAAATTCTAACAAGACGGATAAAGCTTCGATGCTAGATGAGGCGATTGAATATTTGAAGCAGCTTCAGCTTCAAGTGCAGATGTTAATGATGAGAAATGGTTTGAGCTTGCATCCAATGTGTTTACCAGGAGGACTACAAACTATGATACTGCCTCAGACTGGGTTGAGTTTTGATGAGGGTAATGGATATCAGAATTCTACTTGCGGAATTGCCTCGTCTGCAAATGCTGAAACCTTGGTGCAGCCTGATTTTAGTCTTCCCAAGCACTACGGCGTCTCAGAGCAGCCTGTTATCATACCCTCAGTAACAAACATGGCCAATCTAGACGCCTCATCTAGTTTTCAACCGTCCGTCAAGTTTCATGTTGGACACTTTGACCCTTCAACATCATCAAAGGATGCACTCTGTGATGGCACAAAACAATTGCATTTGGATACGACAAAGATTGAAAAAAATGCGTCTTCAGATGTGTCTTAA 1086 0.4549 MAGMYGTPPFLVTGMPSDSEDFSTIFSQLLHSSSSSCMISKPKTLPPPRLSQQVGTAGFSRLEDTHRFGQLDTDSGSDNPLKIGKLVASSDAVAASSSNFNFSDPYTYVPADVKETTGNELFLTGVEDSDENTSLKEHKISPENDPGDFICPVEKNAEASEGKSVPSRTSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLMMRNGLSLHPMCLPGGLQTMILPQTGLSFDEGNGYQNSTCGIASSANAETLVQPDFSLPKHYGVSEQPVIIPSVTNMANLDASSSFQPSVKFHVGHFDPSTSSKDALCDGTKQLHLDTTKIEKNASSDVS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0352 361 MobiDBLite consensus disorder prediction 130 149 - -
Glsi10g0352 361 MobiDBLite consensus disorder prediction 130 144 - -
Glsi10g0352 361 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 172 235 IPR036638 GO:0046983
Glsi10g0352 361 Gene3D - 170 234 IPR036638 GO:0046983
Glsi10g0352 361 CDD bHLH_AtPIF_like 175 237 IPR047265 -
Glsi10g0352 361 FunFam Basic helix-loop-helix transcription factor 170 233 - -
Glsi10g0352 361 Pfam Helix-loop-helix DNA-binding domain 179 225 IPR011598 GO:0046983
Glsi10g0352 361 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 17 333 IPR031066 -
Glsi10g0352 361 MobiDBLite consensus disorder prediction 173 187 - -
Glsi10g0352 361 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 224 IPR011598 GO:0046983
Glsi10g0352 361 MobiDBLite consensus disorder prediction 155 187 - -
Glsi10g0352 361 SMART finulus 181 230 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0352 Glsi-ChrGlsi10 2305555 2307964 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0352 175 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 49.162 1.39e-41 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi10g0352 HLH 4e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0352 10 2305555 2307964 Glsi10g0352 10 2305555 2307964 ECH