Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0351 ATGACTAACTATTCGTTTCTGAATTATCAGCTCTCGAAGCATACCTCCATTTTTGGCTTGCGCCTGTGGGTGGTCCTCGGCATATGCGTAGGAGCAGCCATAGTCCTTGTACTGTTTCTCATATCACTCTGGTTCACTTCCAAGAGGAACAATGCTTCCAAGCTGAAGTCTTCTCAGGACTCCAACATCCCATATGTGTCCAAGGAGATCCAGGAAATCCAGATTGACCATTTTCGAGAGCCAACTCGTCCACAACCTGACACAAAGCCCTACCCATTGCCGGAATCAGAGGCACTGGATAGGGCCCAAGCCATTCTTCTTCAGCAGGAGGATGTAAGCCCGGGAACAGGGTACCACAGAATTCCTATTGAAATCGGGAAGGATCATGGGATTTCGTATCTGGGGGGTTCATCGCAAGGTAGCGGGTCCTGTGAGCAACCCTCAATTGCTGTGCCGGAAGTTTCTCATTTGGGTTGGGGGCATTGGTACACTCTAAGAGAACTTGAGGTCTCTACCAATTGTTTTGCTGATGAGAATGTCATAGGTGAGGGTGGCTACGGAATTGTATACCTCGGCGTGCTGCAAGATAAGACCGATGTTGCAGTTAAAAATCTGCTCAACAACAGGGGACAAGCTGAGAGGGAATTCAAGGTGGAAGTTGAAGCAATTGGACGAGTCCGACACAAAAATTTGGTGAGGTTACTTGGATATTGTGTTGAAGGAGCCCATAGGATGCTTGTTTATGAGTATGTTGACAATGGAAACCTAGAACAGTGGCTGCATGGAGATGCCGGGCCTACTGGCCCTCTTACGTGGGAAATTCGCATGAATATAATACTTGGAACTGCAAAAGGGTTGACATACCTTCATGAGGGGCTGGAGCCTAAGGTTGTTCACCGTGATATCAAGTCGAGCAACATATTGCTTGATAAGCAATGGAATCCGAAAGTTTCTGATTTTGGCCTTGCAAAACTCTTGGGTTCCGAAATGACTTATGTGACAACCCGTGTGATGGGAACATTTGGATATGTGGCTCCAGAATATGCGAGCACTGGCATGCTAAATGAAAGAAGTGATGTGTATAGTTTTGGGGTTCTTCTTATGGAGATCATTTCTGGGAGAAATCCTGTAGATTATAGCCGCCCTCCTGGAGAGGTGAACCTGGTTGATTGGCTGAAGACAATGGTTACAAACCGAAATGCCGAAGGAGTGCTGGATCCTAGGCTACCCGAGAAGCCTTCTTCTAGAGCACTGAAGCGTGCCTTATTAGTAGCTTTACGGTGTGTGGACCCAAATGCCCAAAAAAGGCCAAAGATGGGGCATGTCATACATATGCTTGAAGTTGATGAGTTCCCTCTTCGAGATGACCGTAGAGCTGGAAGGGAACATGGACGATCCCAGCGGGATAACACTGGAGATAGGTTGATGGAGAAGCGAGTAAGTGAATCAGGTGACAGTGGTGGGTATGAAACTAGTGTCCATGCCAGTAAGTCTTTGCAGAGAAAGCAAGAACCTGAAGATTAG 1524 0.4711 MTNYSFLNYQLSKHTSIFGLRLWVVLGICVGAAIVLVLFLISLWFTSKRNNASKLKSSQDSNIPYVSKEIQEIQIDHFREPTRPQPDTKPYPLPESEALDRAQAILLQQEDVSPGTGYHRIPIEIGKDHGISYLGGSSQGSGSCEQPSIAVPEVSHLGWGHWYTLRELEVSTNCFADENVIGEGGYGIVYLGVLQDKTDVAVKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAHRMLVYEYVDNGNLEQWLHGDAGPTGPLTWEIRMNIILGTAKGLTYLHEGLEPKVVHRDIKSSNILLDKQWNPKVSDFGLAKLLGSEMTYVTTRVMGTFGYVAPEYASTGMLNERSDVYSFGVLLMEIISGRNPVDYSRPPGEVNLVDWLKTMVTNRNAEGVLDPRLPEKPSSRALKRALLVALRCVDPNAQKRPKMGHVIHMLEVDEFPLRDDRRAGREHGRSQRDNTGDRLMEKRVSESGDSGGYETSVHASKSLQRKQEPED 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0351 507 CDD STKc_IRAK 181 447 - -
Glsi10g0351 507 PANTHER OS01G0323000 PROTEIN 2 467 - -
Glsi10g0351 507 SUPERFAMILY Protein kinase-like (PK-like) 156 449 IPR011009 -
Glsi10g0351 507 FunFam Probable serine/threonine-protein kinase At1g01540 155 250 - -
Glsi10g0351 507 Pfam Protein tyrosine and serine/threonine kinase 179 446 IPR001245 GO:0004672|GO:0006468
Glsi10g0351 507 ProSiteProfiles Protein kinase domain profile. 175 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0351 507 ProSitePatterns Protein kinases ATP-binding region signature. 181 203 IPR017441 GO:0005524
Glsi10g0351 507 SMART serkin_6 175 446 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi10g0351 507 MobiDBLite consensus disorder prediction 457 484 - -
Glsi10g0351 507 Gene3D Transferase(Phosphotransferase) domain 1 251 456 - -
Glsi10g0351 507 Gene3D Phosphorylase Kinase; domain 1 152 250 - -
Glsi10g0351 507 ProSitePatterns Serine/Threonine protein kinases active-site signature. 297 309 IPR008271 GO:0004672|GO:0006468
Glsi10g0351 507 MobiDBLite consensus disorder prediction 457 507 - -
Glsi10g0351 507 FunFam Putative receptor-like serine/threonine-protein kinase 251 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0351 Glsi-ChrGlsi10 2301035 2303525 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0351 136 489 Trihelix Transcription Factor Family AT1G70460 44.384 6.78e-90 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Glsi10g0351 Pkinase 6.3e-46 CL0016