Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0348 ATGGCTCTCCTGCTAGACAATTGTGATGGCATTTTGCTCTCTTTGGACTCACACAAATCGGTGCCAGCACCTTTTCTCACCAAGACATACCAGCTGGTGGACGATCCCACTACCGATCACATAGTGTCTTGGGGCGAAGACGACACCACCTTCGTCGTTTGGCGTCCACCCGAGTTCGCCAGGGATCTTCTCCCCAACTATTTCAAGCACAATAACTTCTCCAGCTTCGTTCGCCAGCTCAACACCTACGGTTTTAGAAAGATCGTGCCTGACAGATGGGAGTTCGCAAACGAGTTCTTCAAGAGGGGAGAGAAGCACTTGCTGTGCGAGATCCATAGAAGAAAGACGACACAGCCTCAGCAGGTAGCCCTCAATCATCATCCCCATTCTCCTCTGGGAGTCAACGTCCCTTCTTTTTTTCCCTTCCGAACCAGAATGAGCATCTCTCCGTCCCATGACTCCGAGGAGCAACCCAATTGGTGTGAGTCGCCGCCGTTCATGTCTCCAAGAGGAGGCACTGGTGGACCCAACTACAACAGTTCTGTCACTTCCCTGTCCGAGGACAATGAAAGACTCAGGCGAAGCAATAACATGCTCATATCTGAGCTTGCACACATGAAAAAGCTCTATAACGACATAATCTACTTCGTTCAGAACCATGTCAAGCCTGTTGCTCCCAGCAACTCTTATCATTCTTCTTTGTTGCTATCCAATACACCACAAGCATCAGCAAACTCTCCTACAGCTACTACCAATGTTTCAATGAACCAGCTTCTGGGGTATTATTCTACTAACCCTAAGCCAACCCCACAAGCCCATCTTGTGAGCTCTCCAACACACACATCAAAAAGCTCCATAACAGTTGCCGAAGAGCCCAGCAGCAACCGCTGCAAGACCAAGCTTTTTGGTGTGTCGCTTCAATCAAAGAAAAGGGTGCACCCTCAGTATGATTCTAATTATCCTACGAATTCCGAGATGAACAAGGCTCGACTGGTTTTGGAAAAGAATGACTTGGGTTTGAATCTCATGCCCCCTTCGGCTTGTTAG 1047 0.4862 MALLLDNCDGILLSLDSHKSVPAPFLTKTYQLVDDPTTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKRGEKHLLCEIHRRKTTQPQQVALNHHPHSPLGVNVPSFFPFRTRMSISPSHDSEEQPNWCESPPFMSPRGGTGGPNYNSSVTSLSEDNERLRRSNNMLISELAHMKKLYNDIIYFVQNHVKPVAPSNSYHSSLLLSNTPQASANSPTATTNVSMNQLLGYYSTNPKPTPQAHLVSSPTHTSKSSITVAEEPSSNRCKTKLFGVSLQSKKRVHPQYDSNYPTNSEMNKARLVLEKNDLGLNLMPPSAC 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0348 348 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi10g0348 348 Gene3D - 17 116 IPR036388 -
Glsi10g0348 348 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 266 IPR027725 -
Glsi10g0348 348 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi10g0348 348 FunFam Heat stress transcription factor B-4 17 115 - -
Glsi10g0348 348 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Glsi10g0348 348 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi10g0348 348 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi10g0348 348 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi10g0348 348 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi10g0348 348 MobiDBLite consensus disorder prediction 270 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0348 Glsi-ChrGlsi10 2275667 2276826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0348 1 346 HSF AT1G46264 57.143 7.01e-120 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Glsi10g0348 HSF_DNA-bind 2.4e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0348 10 2275667 2276826 Glsi08g1869 08 13240776 13241916 CCT
Glsi10g0348 10 2275667 2276826 Glsi10g0348 10 2275667 2276826 ECH