Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0346 ATGGACATGATAACCATGATGATGCAACTCCCTGAATTCTCCGAAGCCGACTTGCCACCGCCTGAGCTCTCGGGCAGCCCCATATTCCCACAATTTATTGAAAAACCTCCTACGGTTTCGTCCTTACGAGAGAAAGGGATGTCAATGGGGGCCGTGAGGGAGATAATATTCAGGACAGCGGCCATGCAGCCAATACACATAGACCCAGAGTCAGTGAAGCCACCAAAGCGGAGGAACGTCAAGATTTCAAAGGATCCCCAGAGCGTGGCGGCGCGGCATCGCAGAGAAAGAATAAGCGAGAGAATCAGGATACTGCAGAGACTGGTGCCTGGAGGGACTAAGATGGACACCGCCTCAATGTTAGATGAAGCAATTCACTACGTCAAATTTCTCAAGACCCAGGTTCACTCACTCCAACGAGCTGCCGCCAACACCCCAATAGGGATAGGATTCCCTCTCCCAATGTCTACTGGATCTGCCACCTCTTCTTATCTTCCTTCTCAAAATGTTCACCCTTACCCTGATGCATCCCATCAGAGACAGGAGGATTGCTTTGTGTTGATGGACTGGATGCGGGGTAGAATGTTGAATGTGGGTGCACGAAAATTCCATGCTGCCTCTGTTGGAGACACCTGTACGGCAGTCCGAAGCTTGAAAAACAACACGACAAATGCCGGAGACAATGGATTGTGTCGTAAGACAGGTCGTGTTGGTTGGCGTCAGTGTAAGGATCAGCTACTCATGCCAGGTTTCTGTTTGAGACTTGACGCCACTCCTCAAAACTCATCATCAAACTTGAGGACAGGTATGGATTCCAAGCAACCTTTTGGCGGCAATTACCTGTTGCTGAAGCCAGAAAAAGCGAGTGTGGTGGATCTAGGTCGCCTTCTGTTTTCATCTAAATTAAAGGACAGAACATTCATTGAGTGCCCAGAAGAGCTCGAGTACAGAGAATTTAGGCGTCGATGGCTCCTCTTCGTGTCGGTTGTGGTGCAGATGGCCCTCCTTGCCTCGGGAAAGCTCCTCAATCAAGTAGGGTACATAGTGGAGACGTGGCTGAATCTGGTGTCAAGCAACGGCGGCTTAAGAGGGCTTTTGTTGAAAATTCTGAAAGGAAAGATGGTATGGCCGGAGAGATCATCGGCGGAGTTCACATCGGTGGTGGGAATCCTTGACCCGCGACTGGAATTAGACAAGAGCATTAAACACCAGGATACCAAGTACAAAGGATCGCTGTCTGTCATGGCCGCTAAATTGTCGTACGAAAATGAAAAATTCACTCAAAGAGCAGTCACAAATCATTGGGATGTAAGTTCATTATATATATATATATATATATATAAATACCAAGAACTTGCCTCCACACAGGCAATCATAGTCCAAGATGCAAAGTCAGAACCCAACTTAATCGTGGTCGCATTTAGGGGCACGGAGCCATTTGATGCGGATCAATGGAGGACGGATGTGGACGTTTCATGGTATGAGATACCCAACGTGGGCAAGATCCACGGTGGGTTCATGAAAGCTTTGGGTCTACAGAAGAACGGTGGGTGGCCCAAGGAGATAGAAGAACAGAGCAATGGTAGCCAACATGAGTTTGCTTACTACACAATCAGAAAGATGGTGAAAGAGATGCTGCAGAAAAATGAGAAAGCAAAATTCATATTGACAGGACACAGCTTGGGAGCAGCGTTGGCAATTCTGTTTGCGGCTGTGCTGGCACTGCATGAGGAAGCATGGTTGTTGAACAAGTTAGAAGGAGTGTATACGTTTGGGCAGCCAAGAGTAGGAGACCAACAATTTGGCGAGTTCATGAAGCAAAAGTTGAGAATGTATGACGTGAGGTATATGAGGTATGTTTACTGCAATGACTTGGTGCCTAGGATCCCTTACGATGACAAAACTCTCTTGTTCAAGCACTTTGGTCCTTGCCTTTACTTCAACAACTTGTACCAAGGGCAGGTTCTAGAGGAGGAGCCAAACAAGAATTACTTCTCCTTGTTGTGGGCCATACCCAAGAACTTAAATGCGGCTTGGGAGCTTATTAGAAGTTTCATTATCCCATTCATCGGAGGTCAGGACTACAAAGAAAGTTGGTTCATGAAAGTATTTAGGGTGGTTGGATTAATAGTTCCGGGATTATCAGATCATCTTACCCAGGATTACGTAAATCTCACCCGATTGGGGACATTACCTGCAACTCAGAAGCTCCAAGATTCCAAAGCTGACTAA 2232 0.4691 MDMITMMMQLPEFSEADLPPPELSGSPIFPQFIEKPPTVSSLREKGMSMGAVREIIFRTAAMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQVHSLQRAAANTPIGIGFPLPMSTGSATSSYLPSQNVHPYPDASHQRQEDCFVLMDWMRGRMLNVGARKFHAASVGDTCTAVRSLKNNTTNAGDNGLCRKTGRVGWRQCKDQLLMPGFCLRLDATPQNSSSNLRTGMDSKQPFGGNYLLLKPEKASVVDLGRLLFSSKLKDRTFIECPEELEYREFRRRWLLFVSVVVQMALLASGKLLNQVGYIVETWLNLVSSNGGLRGLLLKILKGKMVWPERSSAEFTSVVGILDPRLELDKSIKHQDTKYKGSLSVMAAKLSYENEKFTQRAVTNHWDVSSLYIYIYIYKYQELASTQAIIVQDAKSEPNLIVVAFRGTEPFDADQWRTDVDVSWYEIPNVGKIHGGFMKALGLQKNGGWPKEIEEQSNGSQHEFAYYTIRKMVKEMLQKNEKAKFILTGHSLGAALAILFAAVLALHEEAWLLNKLEGVYTFGQPRVGDQQFGEFMKQKLRMYDVRYMRYVYCNDLVPRIPYDDKTLLFKHFGPCLYFNNLYQGQVLEEEPNKNYFSLLWAIPKNLNAAWELIRSFIIPFIGGQDYKESWFMKVFRVVGLIVPGLSDHLTQDYVNLTRLGTLPATQKLQDSKAD 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0346 743 Pfam Helix-loop-helix DNA-binding domain 92 131 IPR011598 GO:0046983
Glsi10g0346 743 CDD Lipase_3 412 648 - -
Glsi10g0346 743 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 86 142 IPR036638 GO:0046983
Glsi10g0346 743 FunFam BHLH transcription factor 85 147 - -
Glsi10g0346 743 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 274 737 IPR044819 GO:0004806|GO:0006629
Glsi10g0346 743 Pfam Lipase (class 3) 471 633 IPR002921 GO:0006629
Glsi10g0346 743 Gene3D - 81 146 IPR036638 GO:0046983
Glsi10g0346 743 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 82 131 IPR011598 GO:0046983
Glsi10g0346 743 Gene3D alpha/beta hydrolase 400 678 IPR029058 -
Glsi10g0346 743 SMART finulus 88 137 IPR011598 GO:0046983
Glsi10g0346 743 SUPERFAMILY alpha/beta-Hydrolases 417 654 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0346 Glsi-ChrGlsi10 2260656 2269990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0346 279 732 Acyl Lipid Metabolism Gene Families AT1G56630 53.305 5.20e-176 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi10g0346 Lipase_3 3.4e-40 CL0028