Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0321 ATGGTGGTGCCTAAACTATCGTACGAGGAGAGTCGCCGCAAAAGATTGGAGGAGAACAAGAAGAGGATGGAAGCCCTTAATCTACCCAAGCTTTCTCAAGCCATCCGAAATTCCTCTTCTCCCAAACCCTCGCCGATGAAGCAGGTGAAATCTCGCCCAATCGAGAAACATACTGTTGTCGTGAGGAGGTCCAGCCGTGTCGCAAACATGATCGCTCCTGTTTACAAAGAAGTGCTTATTGATCGCGTGGCAATACCTCGAAGAATTCATAGTAAACGAAGGGATTTATCAAACCGCGTATATGCTTCGGAGGAGGACAGGGAGGAAGCTTTTGAGAAAGCAGAAACTTTACTGTCGAATTTAGAATCTGAGTATCCGACATTTATAAAGTCAATGCTCCAGTCGCATGTAAGCGGAGGATTTTGGCTGGGCCTTCCAGTCCAATTCTGCAAGACTAACCTTCCAAAGCGGGACGAAATGATTACTTTGATAGATGAGTCCGGGGATGAGTATCCGACAGTATATTTGCCCCGTAAAACTGGACTCAGCGGTGGATGGAAAGGTTTTGCGGTTGCTCATAACTTGGCTGACGGGGACGCATTAATTTTTCAGTTAATCAGGTCTACAACATTCAAGGTGTACATTATTAGAGTGAATGATCCTCCAGCGGGCAATTAA 678 0.4587 MVVPKLSYEESRRKRLEENKKRMEALNLPKLSQAIRNSSSPKPSPMKQVKSRPIEKHTVVVRRSSRVANMIAPVYKEVLIDRVAIPRRIHSKRRDLSNRVYASEEDREEAFEKAETLLSNLESEYPTFIKSMLQSHVSGGFWLGLPVQFCKTNLPKRDEMITLIDESGDEYPTVYLPRKTGLSGGWKGFAVAHNLADGDALIFQLIRSTTFKVYIIRVNDPPAGN 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0321 225 MobiDBLite consensus disorder prediction 31 46 - -
Glsi10g0321 225 SMART B3_2 128 219 IPR003340 GO:0003677
Glsi10g0321 225 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 46 220 IPR044837 -
Glsi10g0321 225 SUPERFAMILY DNA-binding pseudobarrel domain 121 219 IPR015300 -
Glsi10g0321 225 Coils Coil 104 124 - -
Glsi10g0321 225 Pfam B3 DNA binding domain 128 218 IPR003340 GO:0003677
Glsi10g0321 225 Gene3D - 102 220 IPR015300 -
Glsi10g0321 225 ProSiteProfiles B3 DNA-binding domain profile. 128 219 IPR003340 GO:0003677
Glsi10g0321 225 Coils Coil 6 26 - -
Glsi10g0321 225 MobiDBLite consensus disorder prediction 31 53 - -
Glsi10g0321 225 CDD B3_DNA 126 217 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0321 Glsi-ChrGlsi10 2084050 2085716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0321 1 220 B3 DNA Binding Superfamily AT3G19184 56.444 1.22e-72 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Glsi10g0321 B3 3.4e-16 CL0405