Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0303 ATGCAATCAAACGACTCTGATGATTCCCAACAACAGCCACAGCCGGAGCAGAATTCACGGCAACAGCAAACGCAGACGCAGCAACAGCCGCTGCCACTGCCGCGGCAGTGGATGCCGATGCAGTATCCAGCGACGGCCATGGTAATGCAGCATCACATGTTGCCCCCACATCATTACGCGCCGCCGCCGCCGCCGCCCTATATGCCTTACCACCAGTACCAGCAGCTGCAGCACGTACCTCAACCACAGCAGCATCAGCATCAGCATCAGCATCAGGGATCTAGCGGCGAGAATAAGACGATCTGGGTCGGCGATTTGCATCATTGGATGGACGAAAATTATCTGCATCGCTGCTTCGCTTCCACGGGCGAGATATCCTCCATTAAGGTTATTCGCAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTGGAATTCTATTCGCATGCCACAGCTGAGAAAGTATTGCAGAATTATGTTGGCATTTTGATGCCCAATACAGAGCAACCTTTTCGCCTGAACTGGGCAACATTTAGCACGGGAGAGAAGCGTTCAGATAATGTTCCCGATCTTTCTATATTTGTAGGAGACTTAGCCGCAGATGTTACAGATAGCATGTTGCATGAAACTTTCGCTAGTAGATATCCTTCTGTTAAAGCTGCAAAAGTAGTTTTTGATGCCAATACTGGCCGCTCAAAGGGTTATGGCTTCGTCAGGTTTGGAGATGATAATGAGAGGTCACAGGCTATGACTGAAATGAATGGTGTTTATTGTTCTAGCAGGCCTATGCGTGTAGGAGCTGCAACTCCTAGGAAATCATCTGGCTATCAACAAGGAGGCCATATGTCAAATGGGATATCCAGCCAATCTGAAGCAGATTCAGCAAACACAACCATATTTGTTGGAGGACTCGACCCTAATGTTACAGATGAGGATCTTAGGCAGCCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAAGGATGTGGCTTTGTACAATTTGCAAACAGAAATAATGCTGAAGAGGCGTTGCAGAAGCTGAATGGAACAATGATTGGCAAGCAAACGGTTCGTCTTTCTTGGGGCCGCAATCCAGCAAATAAACAGTTAAGGGTGGATATGGGCAGCCCCTGGAATGGGGCGTATTATGGAGGCCCTATTTATGATGGCTATGGATATGCTTTGCCGTCTCCTCACGACCCAAGCATATATGCCGCTGCGTATGGGGCTTACCCCGTGTATGGAGGCCACCAACAGCAAGTAAGCTGA 1287 0.4833 MQSNDSDDSQQQPQPEQNSRQQQTQTQQQPLPLPRQWMPMQYPATAMVMQHHMLPPHHYAPPPPPPYMPYHQYQQLQHVPQPQQHQHQHQHQGSSGENKTIWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHATAEKVLQNYVGILMPNTEQPFRLNWATFSTGEKRSDNVPDLSIFVGDLAADVTDSMLHETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRVGAATPRKSSGYQQGGHMSNGISSQSEADSANTTIFVGGLDPNVTDEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTMIGKQTVRLSWGRNPANKQLRVDMGSPWNGAYYGGPIYDGYGYALPSPHDPSIYAAAYGAYPVYGGHQQQVS 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0303 428 CDD RRM3_NGR1_NAM8_like 297 368 - -
Glsi10g0303 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 179 IPR000504 GO:0003723
Glsi10g0303 428 CDD RRM1_SECp43_like 100 180 - -
Glsi10g0303 428 CDD RRM2_SECp43_like 191 270 - -
Glsi10g0303 428 SUPERFAMILY RNA-binding domain, RBD 288 398 IPR035979 GO:0003676
Glsi10g0303 428 MobiDBLite consensus disorder prediction 269 290 - -
Glsi10g0303 428 MobiDBLite consensus disorder prediction 1 34 - -
Glsi10g0303 428 FunFam polyadenylate-binding protein RBP47 isoform X2 46 188 - -
Glsi10g0303 428 SUPERFAMILY RNA-binding domain, RBD 65 179 IPR035979 GO:0003676
Glsi10g0303 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 370 IPR000504 GO:0003723
Glsi10g0303 428 MobiDBLite consensus disorder prediction 272 290 - -
Glsi10g0303 428 Gene3D - 185 286 IPR012677 -
Glsi10g0303 428 Gene3D - 287 399 IPR012677 -
Glsi10g0303 428 SUPERFAMILY RNA-binding domain, RBD 176 286 IPR035979 GO:0003676
Glsi10g0303 428 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 88 374 - -
Glsi10g0303 428 Gene3D - 67 184 IPR012677 -
Glsi10g0303 428 FunFam Polyadenylate-binding protein RBP47C isoform A 191 267 - -
Glsi10g0303 428 FunFam Polyadenylate-binding protein RBP47 283 400 - -
Glsi10g0303 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 192 271 IPR000504 GO:0003723
Glsi10g0303 428 MobiDBLite consensus disorder prediction 76 98 - -
Glsi10g0303 428 SMART rrm1_1 100 175 IPR000504 GO:0003723
Glsi10g0303 428 SMART rrm1_1 299 366 IPR000504 GO:0003723
Glsi10g0303 428 SMART rrm1_1 193 267 IPR000504 GO:0003723
Glsi10g0303 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 194 263 IPR000504 GO:0003723
Glsi10g0303 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 168 IPR000504 GO:0003723
Glsi10g0303 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 363 IPR000504 GO:0003723
Glsi10g0303 428 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0303 Glsi-ChrGlsi10 1988277 1991296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0303 74 378 Eukaryotic Initiation Factors Gene Family AT4G34110 28.481 3.99e-30 121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0303 10 1988277 1991296 Glsi08g1897 08 13444961 13448741 CCT
Glsi10g0303 10 1988277 1991296 Glsi10g0303 10 1988277 1991296 ECH