LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi10g0296	ATGCCTCTGTCTAGCAAATCATCATCTTCTCTTCCTTCTAAATCTTCTTCTATTTCTGGTTTTCCCATCAAACAAACTGACGCTGATGGCAATGCTGATGCCTGTAATTTCGTTCACACCAAGGGCCAGTCATTTCACCACCACCGCCGCCTTACCCGACAGAGGAAGCTCCGCCACCTCAGCGACCAAGATGTTGGCTTGCACCTCAATGGGATTTCTTCGCTACCGGCTTCGCTTCATTCCTCTTTCAAGTCTCACTTCCCGGGTGACTCCGACCACTGGTCCTCTTCTGCGGTGCCGCAACCCCTGCCGCTTCCCGAATCACCGTTGACTCGCAGACCGGAGTCAACGGGTCCCAATCCCGGACAGACTCAGCTCGGATCTCCTTCCGTTGAGCATCCGGGCTATGCTTTCAGGAGGAAGACTCTGGATCATGATGTAATCACAAATATAAAGTCTTCAAGCAATTTGTGTAGATCCTCTTGTGATCCAACAATCAAAAATTCGAAGTATGATTTGAGAGTAAACATCCCAGCTGCAAGTTTCTTGACAGGCAATTGTTCATGTCCTAGAGCACTCTCTCATGGTATTGACTCTGAAAATATCTGCAACTCAAGGTTGCGTGTTGCTGCCAAGAGTGCCCCAACAAGTGTTTTATCCAGTCCTGTTACTAGTCCACGTAGATCAAGCAATGTAGATTTCTTTGATCCTTCCATTAGTGTTCGTCAAGAATTTCACGACAATCTTGTTGGTCATTCTTTGAAGGTGTCACCACCCCTGACTGTTCACAGTCCAGACCATTCTTCTCGCCGCAGCACAGGGAGCCATAGTCCTTACCTCAATCCTAAAATTCAAGATGGACATCAGCACCATAAATTTTTTTCCAGTGTGTGGCCTGAAAATAACCATGTTGATTCACATCCATTACCCCTTCCCCCTGGAGCTTCTCCACCAGCACAATCAACTCTGCAGCATCAATTGAGTGCCACACATCATTCTATAGAAAATCCACCTTCAATGAAAGGTCATTGGCAGAAAGGAAAGCTTATTGGATGTGGCACGTTTGGAAATGTTTATCATGCAACCAATCTAGAGACTGGGGCCTCGTGTGCAATGAAGGAGGTGGATCTCATTCCTGATGATCCTAAATCTGCTGAGTGTATAAAGCAACTAGAACAGGAAGTCAAAATTCTTCGACAACTACACCATCCAAATATTGTGCAGTATTATGGCAGTGAAATAGTTGGTGATCACTTGTACATATATATGGAGTATGTTCATCCTGGATCGATCAGTAAATTTGTGCGCGAAAATTTTGGAGCTATGACAGAATCTGTGGTTCGCAATTTTACACGACATATTCTCTCAGGGTTGGCTTACTTGCATAGTACCAAAACTATCCACAGGGACATCAAAGGTGCAAACTTACTTGTTGATGCATCAGGCACTGTCAAGCTTGCTGATTTTGGGATGGCCAAAATTCTAACAGGGAAATCGTATGATCTTTCTTTGAAGGGCAGTCCATACTGGATGGCTCCAGAGGTCATGAAGGCTGCCATAAAGAAAGATGCCAATCCTGACCTTGCCTTTGCTGTTGATATCTGGAGCCTAGGGTGCACCATCATAGAAATGCTGACCGGAAAACCTCCTTGGAGCGAGTTTGAAGGGCCTCAAGCCATGTTCAAGGTACTGCACAATTCACCATCTATACCAGAAACATTATCTTCAGTCGGAAAGGATTTCCTTCAGAAATGTTTTCTAAGGGATCCTGCAGAGCGACCATCAGCTGCAAGGCTTCTTGAGCACGCCTTTGTACAAATTTTGCATGATCAAGATAATTTAGTTCGTTCCCAATTGCATCCTAGAGGAGACCCAGGAGTTAATTCATGTAGTCCCAGAGACTCTGCTAAACATAACCACAATGTAGTTCCAGCCTCCATGGGTACACGGTTTTTTAACAAAATTCAGAAATTAATCAGTGATACTTCCCAACAATATAATGCTGAGGAACCTAATTATATTGCATCTTCTCATCACTCCCTTTACTCTCTGCCAGAAATTAACATTCGTCAGTCTTCCTTGAAACCTAGTACCCTCAGTTACATTTCTGCTTCAAATACCAGTAACATACCCCTCACTCTTGTGAGAATCATCACGCACTTTTGA	2166	0.4437	MPLSSKSSSSLPSKSSSISGFPIKQTDADGNADACNFVHTKGQSFHHHRRLTRQRKLRHLSDQDVGLHLNGISSLPASLHSSFKSHFPGDSDHWSSSAVPQPLPLPESPLTRRPESTGPNPGQTQLGSPSVEHPGYAFRRKTLDHDVITNIKSSSNLCRSSCDPTIKNSKYDLRVNIPAASFLTGNCSCPRALSHGIDSENICNSRLRVAAKSAPTSVLSSPVTSPRRSSNVDFFDPSISVRQEFHDNLVGHSLKVSPPLTVHSPDHSSRRSTGSHSPYLNPKIQDGHQHHKFFSSVWPENNHVDSHPLPLPPGASPPAQSTLQHQLSATHHSIENPPSMKGHWQKGKLIGCGTFGNVYHATNLETGASCAMKEVDLIPDDPKSAECIKQLEQEVKILRQLHHPNIVQYYGSEIVGDHLYIYMEYVHPGSISKFVRENFGAMTESVVRNFTRHILSGLAYLHSTKTIHRDIKGANLLVDASGTVKLADFGMAKILTGKSYDLSLKGSPYWMAPEVMKAAIKKDANPDLAFAVDIWSLGCTIIEMLTGKPPWSEFEGPQAMFKVLHNSPSIPETLSSVGKDFLQKCFLRDPAERPSAARLLEHAFVQILHDQDNLVRSQLHPRGDPGVNSCSPRDSAKHNHNVVPASMGTRFFNKIQKLISDTSQQYNAEEPNYIASSHHSLYSLPEINIRQSSLKPSTLSYISASNTSNIPLTLVRIITHF	721

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi10g0296	721	ProSitePatterns	Protein kinases ATP-binding region signature.	350	373	IPR017441	GO:0005524
	Glsi10g0296	721	MobiDBLite	consensus disorder prediction	113	130	-	-
	Glsi10g0296	721	SUPERFAMILY	Protein kinase-like (PK-like)	324	606	IPR011009	-
	Glsi10g0296	721	ProSiteProfiles	Protein kinase domain profile.	344	605	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi10g0296	721	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	49	618	-	-
	Glsi10g0296	721	Gene3D	Transferase(Phosphotransferase) domain 1	341	636	-	-
	Glsi10g0296	721	MobiDBLite	consensus disorder prediction	256	279	-	-
	Glsi10g0296	721	Pfam	Protein kinase domain	345	604	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi10g0296	721	MobiDBLite	consensus disorder prediction	1	24	-	-
	Glsi10g0296	721	MobiDBLite	consensus disorder prediction	90	134	-	-
	Glsi10g0296	721	MobiDBLite	consensus disorder prediction	262	279	-	-
	Glsi10g0296	721	FunFam	Mitogen-activated protein kinase kinase kinase 5	341	641	-	-
	Glsi10g0296	721	SMART	serkin_6	344	605	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi10g0296	721	MobiDBLite	consensus disorder prediction	1	35	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi10g0296	Glsi-ChrGlsi10	1942060	1946664	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi10g0296	307	606	MAP Kinase Kinase Kinase	AT5G66850	70.667	1.75e-151	454

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Glsi10g0296		Pkinase	2e-65	CL0016