Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0291 ATGTCGGGCAACAGTTGGTCGATAAAGGCACACCCCGTTGAGCAAGCTTTTCACGGTGAAAGTCGCCGGGATAGGAAACCAAGCACTGCCAACAAGGAATTACGCTTTGCACCCAGCTTTCAGCAAGGTTCTAGATTTGCAGATGCTCTTTCAAACATGGTGACATTTTTGGCCAGGCGTAAGGGGATTGTTGTTTCAGTTTGTCAGTTGAATCCAAGAGCGAGAGTTCTCTTACGAGGGAGAGAGGCAGGGGAGGGGGGAGAAGAGCTCAGATATGCACAGGGGCATTTATGGGTTGCCTGCGATTCCCTTCCCTGCTTTTCTCTCCAGGTCTTAATTCAACTCTTTCGTCTCCCATTCACTGGTTTCTCCCGTGGAAATGGCTCCAATCTGCTAGGGTTTCCTAGTTCTCGCGTCTTACTCTTCGAAACCACTCTGTACCTAATCTTCATCAAGCTAATCAAGTTTGCAGATATGGCTATCCGGGTTACTTTTAGTTATTCAGGCTATATCGCCCAGAGCCTTGTCTCTTCGGCCGGTATTCGAGTCGGTAATTCCCGTTGCTTCCAAGAGTGCTGGATCCGGTCTCGCATATACTATCCTGGCCAACAGAAACCTGATATTGATCCCTCTGGCGGCGTGCGTAATTACCATACCGATTTCAGACGGCCCAAATGGAATTTCTCGGCTACAGACTCTTCGTATACTACTATCGCCGGAGGACTTCTGGGTGATAATTGTAAAAACCCGATAGTGTTGGGTATGATTTCGATGATGAAGTCAACGGTTGGTTCATCGGGTTCATCTGCTGCGAGCATGGCTATATGTGGTATTTCCCCGTTTAAAGCCACTTCGATTTTACCCTTTTTACAGGGATCGAAGTGGCTTCCTTGTAAGGAGTCGATTCCCGTTCCTACAAGCTTTATGGTGGATAAAGGTGGAACTCACAGTTTTGACGGTGATGATAATGCGGTGTCAGGGTACAGTCCCAAGGGTTTTGAGAAGGCAAGTTGGCTTTCGCGCTTGTTGAGTCTCTGTTCAGAGGATGTGAAAGCTGTGTTTACTGCTGTGACTGTTAGTTTGCTCTTCCGATCGTTCTTGGCTGAACCGAGATCGATTCCCTCGTCTTCTATGTACCCAACTCTGGATGTGGGTGACCGTATTTTAGCAGAGAAGGTTTCCTTCTTCTTCAGAAAGCCTGATGTTTCAGATATAGTAATTTTTAAGGCGCCTCCTATTTTACAGGAAATTGGTTATAGTTCAGCTGATGTATTTATAAAAAGGATTGTGGCAAAGGCTGGCGACTGTGTTGAAGTTCGTGATGGAAAATTACTGGTGAATGGTATTGCTCAAGAAGAGGAATTTGTTTTAGAGCCACTCACTTATGAGCTGGATCCGCTGGTTGTGCCTGAAGGTTATGTCTTTGTGATGGGAGACAATCGCAATAATAGCTTTGACTCACATAACTGGGGTCCGCTCCCAATCAATAACATTGTTGGGAGATCCGTGTTTCGGTACTGGCCTCCATCCAAAGTTTCTGATACTCATTATAAACCACCGCCTGGAAAGAATTATGTGGCAATTTCTTGA 1590 0.461 MSGNSWSIKAHPVEQAFHGESRRDRKPSTANKELRFAPSFQQGSRFADALSNMVTFLARRKGIVVSVCQLNPRARVLLRGREAGEGGEELRYAQGHLWVACDSLPCFSLQVLIQLFRLPFTGFSRGNGSNLLGFPSSRVLLFETTLYLIFIKLIKFADMAIRVTFSYSGYIAQSLVSSAGIRVGNSRCFQECWIRSRIYYPGQQKPDIDPSGGVRNYHTDFRRPKWNFSATDSSYTTIAGGLLGDNCKNPIVLGMISMMKSTVGSSGSSAASMAICGISPFKATSILPFLQGSKWLPCKESIPVPTSFMVDKGGTHSFDGDDNAVSGYSPKGFEKASWLSRLLSLCSEDVKAVFTAVTVSLLFRSFLAEPRSIPSSSMYPTLDVGDRILAEKVSFFFRKPDVSDIVIFKAPPILQEIGYSSADVFIKRIVAKAGDCVEVRDGKLLVNGIAQEEEFVLEPLTYELDPLVVPEGYVFVMGDNRNNSFDSHNWGPLPINNIVGRSVFRYWPPSKVSDTHYKPPPGKNYVAIS 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0291 529 SUPERFAMILY LexA/Signal peptidase 364 513 IPR036286 -
Glsi10g0291 529 CDD S26_SPase_I 369 501 IPR019533 GO:0004252|GO:0006465
Glsi10g0291 529 Gene3D Umud Fragment, subunit A 363 518 - -
Glsi10g0291 529 ProSitePatterns Signal peptidases I signature 3. 474 487 IPR019758 GO:0004252|GO:0016020
Glsi10g0291 529 NCBIfam signal peptidase I 351 508 IPR000223 GO:0006508|GO:0008236|GO:0016020
Glsi10g0291 529 ProSitePatterns Signal peptidases I serine active site. 375 382 IPR019756 GO:0004252|GO:0016020
Glsi10g0291 529 PANTHER SIGNAL PEPTIDASE I 302 514 IPR000223 GO:0006508|GO:0008236|GO:0016020
Glsi10g0291 529 FunFam Peptidase/ serine-type peptidase 375 506 - -
Glsi10g0291 529 Pfam Signal peptidase, peptidase S26 350 507 IPR019533 GO:0004252|GO:0006465
Glsi10g0291 529 PRINTS Bacterial leader peptidase 1 (S26A) family signature 366 382 IPR000223 GO:0006508|GO:0008236|GO:0016020
Glsi10g0291 529 PRINTS Bacterial leader peptidase 1 (S26A) family signature 425 437 IPR000223 GO:0006508|GO:0008236|GO:0016020
Glsi10g0291 529 PRINTS Bacterial leader peptidase 1 (S26A) family signature 469 488 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0291 Glsi-ChrGlsi10 1912760 1917288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0291 378 508 MADS-box Gene Family AT1G29960 34.586 5.14e-15 70.1