Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0287 ATGCAGGCCTTTGGCTGCTTTCTAGTTTTATCATTTTTTCTCTTATTATCTTCCTCAAATGCTCTCTCCGACACTGAAGTCTCCTTCATTGCTCGTCGCCAGTTGTTAACTCTTCGCGAGAATGGAGATTTACCTGACAACTACGCAGATACCTATAAAACAGATCTAACATTCCCTAATCCTAGACTAAAACGTGCTTATATTGCACTTCAAGCTTGGAAAAAGGCTATGTATTCAGATCCACTAAAAACCACGAGCAACTGGGTGGGACCAGACGTTTGTTCTTATAATGGAGTTTTCTGTGCACCTGCTCTGGACGACCCGCTTCTCAACGTTGTGGCTGGGATTGATCTTAACCACGCAGACATTGCAGGTTTCATTCCTGTTGAGATCGGTTTGTTAACCGACCTTGCTTTATTGCATATAAACTCAAATAGATTTTGTGGGATTCTTCCAAAAAGCTTCTCCAAGCTAAAGCTTTTGCACGAGCTAGATATCAGCAATAACCGCTTTGTTGGCCCATTCCCAGAGTGTATTCTACCAATTCCGGAGATCAAATACCTTGACCTCAGGTACAATAACTTTGAGGGCGCATTGCCTCCCGAGCTCTTCAACAAGAATCTTGATGCTATCTTTTTGAACAACAACCGATTCACATCCACAATTCCAGAAAACTTGGGAAATTCTCCAGCCTCTGTGGTAGTGTTGGCCAATAACCATTTGACTGGATGCATTCCGAGAAGCATTGGTCAAATGGAAAAGACATTGAATGAGATTATTTTAATAAACAACAACCTCACCGGGTGCTTGCCTACAGAAATTGGAAGACTTGGCAGCGTGACAATATTGGATGTAAGCGAAAACTTATTTGGTGGCATCTTGCCCAAGTCCTTCAATGGACTTAAAAGGGTAGAGGAGATATCTGTTGCCCACAACAAGTTCACCGGCTTTGTCCCACAAAGCATATGCAGCTTGCCAAGTTTAGTGAATTTCACATTCCTCGATAACTATTTTAATGGTGAGGAACAGGGTTGTGTACCTAATTCTAGAAAGGGCATTGTGTTAGATGATAATAGCAATTGCGTACCGGATAGGCCAAACCAGAAGGTGGCAAATGCATGCACTGCTGTGATAAGCAAGCCTATTGATTGTGGCAAGGCACAATGTGGCCATCCATCACTTCCCCACCCAAAACCTACGACTGAGAAGCCTACTCCATCTGTTTCAGAACCCCAACCTCCTAAACTGCAACCCCAACCACCCACAGGGGAACTTCCAAAACCACAGCCACAACCACCCAAAGAGCAATCTCTAAAACCCCAACCACCCAAAGAGGAACACCTTAAAACTCAACCACCTCAACAGCAACCCCCTAAACCACAACAAACACCTCAGCCACCAAAAGAGGAAGCTCCTAAGCAACAACCTCCCACAACCCAACCCCAACCACCTAAGGAGGAACCACCGAAAGCTTCACCACCTGAAGATGATTCACATAGAGAACTGCCTAAAAAACCACATAGGCCTCCTCGATCACTACCACCACCTCAAGTTCACTCTCCACCTCCTCCAGCCCACTCTTCACCACCCCCACCTCTTCAATTCCCACCACCTCCTGTTCAGTCTCCTCCTCCACCAACACTTCACTCTCCGCCACCACCTGTTCAGTCTCCTCCGCCCCCAGTTCACTCTCCGCCACCACCTGTCCAGTCTCCTCCGCCCCCAGTTCACTCTCCGCCACCACCTGTTCAGTCTCCTCCTCCACCAACACTTCACTCTCCGCCACCACCTGTTCAGTCTCCTCCGCCCCCAGTTCACTCTCCGCCACCACCTGTCCAGTCTCCTCCGCCCCCAGTTCACTCTCCGCCACCACCTGTTCAGTCTCCTCCTCCACCAACACTTCACTCTCCGCCACCACCTGTTCAGTCTCCTCCGCCCCCAGTTCACTCTCCGCCACCACCTGTCCAGTCTCCTCCGCCCCCAGTTCACTCTCCGCCACCACCTGTCCAGTCTCCTCCACCTCCAGTTCACTCCCCACCACCTCCTGTCCAATCTCCTCCACCCCCGGTTCACTCTCCACCACCTCCTGTCCAATCTCCTCCACCCCCGGTTCACTCTCCACCACCTCCAGTCCAATCTCCTCCTCCACCCCCCGTACACTCTCCACCACCTCCTGTCCAATCTCCTCCTCCACCCCCAGTACACTCTCCACCACCTCCTGTTCATTCTCCTCCTCCTCCAGTTCACTTTCCACCACCTCCTGTCCATTCTCCTCCTCCTCCTCCCCCAGTATTCTCTCCACCTCCACCACCAGTCCAATCTCCCCCTCCAACTGTTCAATCTCCGCCACCACCTTCTCCTTCTCTTTTACCTCCTCCACCAGAAGATATCATTCTTCCCCCAATTTTTGGTGCTTCATACGCGTCGCCACCTCCTCCAGTCATCCCTGGATACTAA 2457 0.5006 MQAFGCFLVLSFFLLLSSSNALSDTEVSFIARRQLLTLRENGDLPDNYADTYKTDLTFPNPRLKRAYIALQAWKKAMYSDPLKTTSNWVGPDVCSYNGVFCAPALDDPLLNVVAGIDLNHADIAGFIPVEIGLLTDLALLHINSNRFCGILPKSFSKLKLLHELDISNNRFVGPFPECILPIPEIKYLDLRYNNFEGALPPELFNKNLDAIFLNNNRFTSTIPENLGNSPASVVVLANNHLTGCIPRSIGQMEKTLNEIILINNNLTGCLPTEIGRLGSVTILDVSENLFGGILPKSFNGLKRVEEISVAHNKFTGFVPQSICSLPSLVNFTFLDNYFNGEEQGCVPNSRKGIVLDDNSNCVPDRPNQKVANACTAVISKPIDCGKAQCGHPSLPHPKPTTEKPTPSVSEPQPPKLQPQPPTGELPKPQPQPPKEQSLKPQPPKEEHLKTQPPQQQPPKPQQTPQPPKEEAPKQQPPTTQPQPPKEEPPKASPPEDDSHRELPKKPHRPPRSLPPPQVHSPPPPAHSSPPPPLQFPPPPVQSPPPPTLHSPPPPVQSPPPPVHSPPPPVQSPPPPVHSPPPPVQSPPPPTLHSPPPPVQSPPPPVHSPPPPVQSPPPPVHSPPPPVQSPPPPTLHSPPPPVQSPPPPVHSPPPPVQSPPPPVHSPPPPVQSPPPPVHSPPPPVQSPPPPVHSPPPPVQSPPPPVHSPPPPVQSPPPPPVHSPPPPVQSPPPPPVHSPPPPVHSPPPPVHFPPPPVHSPPPPPPVFSPPPPPVQSPPPTVQSPPPPSPSLLPPPPEDIILPPIFGASYASPPPPVIPGY 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0287 818 MobiDBLite consensus disorder prediction 397 438 - -
Glsi10g0287 818 MobiDBLite consensus disorder prediction 453 488 - -
Glsi10g0287 818 SUPERFAMILY L domain-like 69 344 - -
Glsi10g0287 818 FunFam Leucine-rich repeat extensin-like protein 1 67 228 - -
Glsi10g0287 818 Pfam Leucine rich repeat 280 329 IPR001611 GO:0005515
Glsi10g0287 818 Pfam Leucine rich repeat 137 195 IPR001611 GO:0005515
Glsi10g0287 818 MobiDBLite consensus disorder prediction 489 508 - -
Glsi10g0287 818 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 10 508 - -
Glsi10g0287 818 MobiDBLite consensus disorder prediction 389 818 - -
Glsi10g0287 818 Pfam Leucine rich repeat N-terminal domain 69 101 IPR013210 -
Glsi10g0287 818 Gene3D Ribonuclease Inhibitor 66 364 IPR032675 -
Glsi10g0287 818 PRINTS Proline rich extensin signature 395 416 - -
Glsi10g0287 818 PRINTS Proline rich extensin signature 468 493 - -
Glsi10g0287 818 PRINTS Proline rich extensin signature 426 442 - -
Glsi10g0287 818 PRINTS Proline rich extensin signature 449 466 - -
Glsi10g0287 818 MobiDBLite consensus disorder prediction 509 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0287 Glsi-ChrGlsi10 1894916 1897372 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0287 4 490 Trihelix Transcription Factor Family AT3G19020 53.552 0.0 571