Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0286 ATGGGAGTCAATGAGACAAGGATGGCATTATATGAAGAGGCAGGAAGAGACGCGTTAGAGGCCAAACTAGAGGCTGTGCAACAATTTCTGAGCAAATATTACCCACAATGGGGGATGGTCTCTATTGAAGTGCCGCAAAATTCTCCGACCGCTCTAAATATAGTTGTTACGTGTTTTGCTCCACGTCTGTTATGCATCCTATATTCCCTAAATTTGCGTTTTGATGCAAATGTCGTTCCGGACTGTGAGGAGAACTTAAATGTGAGGAGACCTCACTTCTATGAGCTTTATTCCTCCACATCGAGCTCCGAGAGACTGCTGCTGTCTTTTGATGCTGAAATCATAATTTCTCTGCAAATGAGCAATAGAACTCTTGAGTTTGAATTGTTTAAAGAGAACTCTCTTTTGTTGCAGAAAGTTCCTGCTGGATTCATCGGTCACATGGAAGGCAGGACTTCTGGATTAGTCTCATTGACAGGTCCTAGTGGAAATACTTGGCATGTTCAATTGATTCAGCAGGATGGCGATCTATTCCTCCATCACGGATGGCCAACATTTTTGGAAGACCATATTATAGAAAGTGGTGACCTTTTGGTTTTCAGATATGAGGGTCACCTCCATTTCACTGTGCAAGTATTTGATCAAAGAGCATGTGAGAAAGAAGCAGCATTTAGTTCTGAATGCAGTCAAAATTCTCGTAACCTTGATAATATTAAAGCCCAAAAAAGAGAGAGGGAGGACAATTCTTCTTTGAATGTTATTGCGGAAGGTTTTCTAAAGAAAATGAGAGGGAGCACCTTTGAGAACCGGGAACTCAAGATGAGCATAGTTGATAAAGAGTTATCCCAGCATGAGCGGGTAAAACCAATTAATATGTTCAGAGAAAAAGGAGAATCCTCTAAAGAAAATGAGCAACCTAGATGCCTAGCTAGTGATTTTTCCGTGCCTTCTCAAATGGAATATAGCAATGAAGATGGAGAGCCTGCCATCCAGAATGGAAGCGGGAAGGATGATGATCAATATATACATAGTAGAGTTTGTCTATCGAAGTTATCATCGTACGATGAGAAAAGAGTAGCTCAATTGTTTACTTCCTCTTTCCCGTATTTTGTGAGAATCATGAAAAGCTTCAACATCAGTGGTTCGTATACTCTGAATATCCCTTATCAATTTTCAATGGCAAATCTTCCAAACTGCAAGACAAAGATCATCCTTCATAATATGAAAGGAGAACGTTGGACTGTTAACTCTGTGCCAACAACAAGAGTTCATACAAGTCACACACTTTGTGGAGGATGGATGGCTTTTGTTCGTGGCAATGACATCAAGATCGGAGATATCTGCATTTTTGAACTCACGCATGAGTGTGAATTACGTGTCCGCATTGTTGTGGTTGGAAAAGATGGGATAGACTGCCAGGTTGGGAAACTGGCTTTTGGTAGGCCTTATGCAGGACATGGTATCACCTCCCATAGAACTTCTAGATATATGCCGATCAATCCCAAAGTCAATTCAAAATGCATAGGAAAGGTTGATCTATCTGATAAAAAGTGGTCAAAGATGGGTCAAGATGCTGTTTTGTCTATTGAAAAAAAGAAACCTGGTAGAGCATCAAATACTCATATGAAGATGGGAATTTGCCCTCAGTCGGAAGCTACCCATAAAAAGTTGGGTAAGGTTTCTACTTCTATCTATTTCTTCACTCGGATAGCTTTTCAGAGGAGACATCGTACTGAAGATGAACTAGGCTCACAGGCTAAGGCTGGTTTGAGAATGTTGTTTGCACTTGATGAACAAAGGGTGGCTCAAGCTTTCACTTCATCTTTTCCTAGTTTTGTAAAAATCATGAAAAAGTTCAATGTCAGTGGATCGTACACATTGAAAATCCCATACCAGTTCTCTGCAGCACATCTCCCAACCTACAAAACAGAAGTTCTGCTTCGTAATTTAAGAGGTGAATGTTGGACTGTGAACTCTGTCCCAGACACAAAAGGCAGAGCAGTGCACACCTTTTGCGGGGGCTGGATGGCCTTTGTTCGCGATAATGACATCAATTTTGGCGACACGTGCATTTTTGAACTTGTTGATAAGTGTGAGATGCAGGTTTATATATCTGGGCTCGGAAAGGAAGGGCTTGACCACCAGAATAGGGAAACAAAATCTAATAGATTAGCTATAGTTCCATCTACCAGCAAACACTCTTGTTTGTGA 2211 0.4102 MGVNETRMALYEEAGRDALEAKLEAVQQFLSKYYPQWGMVSIEVPQNSPTALNIVVTCFAPRLLCILYSLNLRFDANVVPDCEENLNVRRPHFYELYSSTSSSERLLLSFDAEIIISLQMSNRTLEFELFKENSLLLQKVPAGFIGHMEGRTSGLVSLTGPSGNTWHVQLIQQDGDLFLHHGWPTFLEDHIIESGDLLVFRYEGHLHFTVQVFDQRACEKEAAFSSECSQNSRNLDNIKAQKREREDNSSLNVIAEGFLKKMRGSTFENRELKMSIVDKELSQHERVKPINMFREKGESSKENEQPRCLASDFSVPSQMEYSNEDGEPAIQNGSGKDDDQYIHSRVCLSKLSSYDEKRVAQLFTSSFPYFVRIMKSFNISGSYTLNIPYQFSMANLPNCKTKIILHNMKGERWTVNSVPTTRVHTSHTLCGGWMAFVRGNDIKIGDICIFELTHECELRVRIVVVGKDGIDCQVGKLAFGRPYAGHGITSHRTSRYMPINPKVNSKCIGKVDLSDKKWSKMGQDAVLSIEKKKPGRASNTHMKMGICPQSEATHKKLGKVSTSIYFFTRIAFQRRHRTEDELGSQAKAGLRMLFALDEQRVAQAFTSSFPSFVKIMKKFNVSGSYTLKIPYQFSAAHLPTYKTEVLLRNLRGECWTVNSVPDTKGRAVHTFCGGWMAFVRDNDINFGDTCIFELVDKCEMQVYISGLGKEGLDHQNRETKSNRLAIVPSTSKHSCL 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0286 736 SMART B3_2 370 466 IPR003340 GO:0003677
Glsi10g0286 736 SMART B3_2 127 216 IPR003340 GO:0003677
Glsi10g0286 736 SMART B3_2 612 710 IPR003340 GO:0003677
Glsi10g0286 736 Gene3D - 597 706 IPR015300 -
Glsi10g0286 736 Gene3D - 352 466 IPR015300 -
Glsi10g0286 736 CDD B3_DNA 368 462 IPR003340 GO:0003677
Glsi10g0286 736 CDD B3_DNA 140 214 IPR003340 GO:0003677
Glsi10g0286 736 CDD B3_DNA 610 704 IPR003340 GO:0003677
Glsi10g0286 736 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 140 466 IPR044837 -
Glsi10g0286 736 SUPERFAMILY DNA-binding pseudobarrel domain 139 221 IPR015300 -
Glsi10g0286 736 SUPERFAMILY DNA-binding pseudobarrel domain 363 462 IPR015300 -
Glsi10g0286 736 Pfam B3 DNA binding domain 374 462 IPR003340 GO:0003677
Glsi10g0286 736 Pfam B3 DNA binding domain 140 215 IPR003340 GO:0003677
Glsi10g0286 736 Pfam B3 DNA binding domain 612 699 IPR003340 GO:0003677
Glsi10g0286 736 SUPERFAMILY DNA-binding pseudobarrel domain 605 706 IPR015300 -
Glsi10g0286 736 Gene3D - 87 218 IPR015300 -
Glsi10g0286 736 ProSiteProfiles B3 DNA-binding domain profile. 140 216 IPR003340 GO:0003677
Glsi10g0286 736 ProSiteProfiles B3 DNA-binding domain profile. 370 466 IPR003340 GO:0003677
Glsi10g0286 736 ProSiteProfiles B3 DNA-binding domain profile. 612 708 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0286 Glsi-ChrGlsi10 1889658 1894851 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0286 607 711 B3 DNA Binding Superfamily AT5G42700 35.238 2.27e-14 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Glsi10g0286 B3 8.9e-13 CL0405