Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi10g0266 ATGGGGAATCGACCTGGTAAAGGATTTTGCCGACGAAAAACGCGGTTGAAGAGAAACCCCATGGGTTTCGTTCATCACCAAGCTTCACCTTCTCACGTAGGGATAAGAACTGTGGGCGCCGACAATTTTTGTAACTTGTCCGCCAATTCAGATATCTGCATCTCTGTAGTGACTTGGAATATGAACGGCCAGGCTTCGTTTGAAGATCTGGCAGAAATGGTTGGGAGCAACTGTGAGTTCGATCTTCTAGTCATTGGCTTGCAAGAGGCTCCACGAAAAAGACTTGCAAAGCTGCTGCGAGCAGCTCTGCCTGGAACTCACATGCTGATAGGTAAAGTTATGATGCAATCTTTGCAGTTGTACCTATTTGGGCCCAAGAATGCAGGATCATTCATTAAAGAATTGAAGGTGGACAAACAGTCGGTTGGGGGGTGCGGAGGAATAATTGGAAGAAAGAAAGGGGCAGTAGCAATCTGGATTAACTACAAAGGCATACGGATGGTGTTCATCTCCTGCCATCTCTCTGCTCATGCTCGCAACGTAGAGGAAAGAAATTCAGAATGCAGGCACATATCGCACTCCCTCTTCTCCAGGAACTGGAACCCATATGCCAGACCATCCCAAATCACTGTTTGGTTGGGAGATCTAAATTACAGGCTACAGGGCATTGATACCTATCCAGCTAGAAATCTGATAGAGAGAGACCTGCACCGGCAGCTGCTTAGCAAAGATCAGCTCTTACAAGAGGCTGGAAGAGGGCAGATTTTCAATGGCTACTGCGAGGGGACATTGACATTCAAGCCAACCTACAAGTATAATGTTGGAAGCAACAATTATGATACAAGTTACAAGGTGCGGGTACCATCTTGGACGGATCGCATATTGTTCAAGATAGAAGATGCAGATAACATGGAAGCGACTTTACATTCCTACGAATCAATGGATGAAATAAACGGTTCGGATCATAAGCCAGTGAAGGCGCGCCTCTGCTTAAGACTTCGTAGAAATTTAAAATACTATGAACACATAGGAATCCACCTTATGGGTTGGCTTAGCAAAATTTTTAAAGGCTCCAACCATAAAATTTCGGAAGGGCATTACCATGCAGATTATAGAGAGGATACAGATTATTACGTACCATCAACTTCAGGGGATGTCTGGTCAGAAAATGAGAACGAAGATATAGATCGAGCTATTGCACTTTCTCTTGTAGAGGAAAATCGAAAGGGAAAGAAAATAAATGATTGCAATTCACATTTAGAAGAAGATGAACAACTTGCTAGAGCTATACAAGAAAGTCTAAATGTTGAGTCTCCTCCTAGATATGGAAATGGAAATATGTATCAACCTACTCCAGTGTATTTCCCAATGGGGTCCAGGATTTGTGCTGGTTGCAATACTGAGATTGGTTATGGACGATATCTAAATTGCTTGAATGCATTCTGGCATCCTGAATGCTTTCGCTGCCATGGTTGCAACCTGCCAATCTCTGATTATGAGTTCTCCACGTCTGGGAATTACCCTTATCATAAATCATGCTATAAGGAAAACTACCATCCAAAATGTGATGTATGCAATCACTTTATTCCAACAAACCCTGCTGGTCTTATTGAATATAGGGCACATCCTTTCTGGATCCAGAAATATTGCCCTGCTCATGAACATGATGGTACTCCCCGCTGTTGCAGTTGTGAGCGTATGGAGCCGCGAGAGACAGGATACATTGCTCTTAATGATGGCCGGAAGCTTTGCCTGGAGTGTCTGGACTCTGCTATCATGGATACTAGCGGATGCCAACCCCTTTATATAGACATACAAAAATTTTATGAAGGTCTACATATGAAACTGGACCAGCAAATTCCATTGCTCTTGGTCGAAAGACAAGCATTGAATGAAGCAAGAGAGGGGGAGAAGAATGGCCACTATCACATGCCCGAGACCAGGGGACTCTGCCTTTCTGAAGAACAGACTATCAGCACCATCTTAAGGCGACCTAGGTTTGGGACAGGAAATAGAGCAGTAGACATGAGAACACAACCCTACAAATTGACTCGACGCTGTGATGTGACGGCAATTCTCATTTTGTATGGTCTTCCAAGGTTGCTTACTGGATCAATCCTAGCTCATGAGATGATGCATGCATGGCTGCGACTTAAAGGTTATCGGACTCTCAGACAAGATGTTGAAGAAGGTATTTGTCAAGTTGTGGCTCATATGTGGTTGGAGTCTGAGCTCTCGTCTGCATCGGGCAGTGACTTCGCATCAGCCTCATCCTCGTCTGCATCCTATACATCTAGAAAAGGCAAAAGACCTCAGTTTGAGAGGAAGCTTGGGGAGTTCTTCAAGCACCAGATTGAATCAGACATTTCCCCTGTATATGGAGATGGATTTAGGGCAGGTCAACTAGCAGTTCGTAAGTATGGTCTACCAAGAACCCTTCAGCATATTTGGGTGACAGGGACTTTTCCCTTTTGA 2475 0.442 MGNRPGKGFCRRKTRLKRNPMGFVHHQASPSHVGIRTVGADNFCNLSANSDICISVVTWNMNGQASFEDLAEMVGSNCEFDLLVIGLQEAPRKRLAKLLRAALPGTHMLIGKVMMQSLQLYLFGPKNAGSFIKELKVDKQSVGGCGGIIGRKKGAVAIWINYKGIRMVFISCHLSAHARNVEERNSECRHISHSLFSRNWNPYARPSQITVWLGDLNYRLQGIDTYPARNLIERDLHRQLLSKDQLLQEAGRGQIFNGYCEGTLTFKPTYKYNVGSNNYDTSYKVRVPSWTDRILFKIEDADNMEATLHSYESMDEINGSDHKPVKARLCLRLRRNLKYYEHIGIHLMGWLSKIFKGSNHKISEGHYHADYREDTDYYVPSTSGDVWSENENEDIDRAIALSLVEENRKGKKINDCNSHLEEDEQLARAIQESLNVESPPRYGNGNMYQPTPVYFPMGSRICAGCNTEIGYGRYLNCLNAFWHPECFRCHGCNLPISDYEFSTSGNYPYHKSCYKENYHPKCDVCNHFIPTNPAGLIEYRAHPFWIQKYCPAHEHDGTPRCCSCERMEPRETGYIALNDGRKLCLECLDSAIMDTSGCQPLYIDIQKFYEGLHMKLDQQIPLLLVERQALNEAREGEKNGHYHMPETRGLCLSEEQTISTILRRPRFGTGNRAVDMRTQPYKLTRRCDVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYRTLRQDVEEGICQVVAHMWLESELSSASGSDFASASSSSASYTSRKGKRPQFERKLGEFFKHQIESDISPVYGDGFRAGQLAVRKYGLPRTLQHIWVTGTFPF 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi10g0266 824 SMART i5p_5 50 337 IPR000300 GO:0016791|GO:0046856
Glsi10g0266 824 Pfam LIM domain 462 516 IPR001781 -
Glsi10g0266 824 ProSiteProfiles LIM domain profile. 460 520 IPR001781 -
Glsi10g0266 824 FunFam Protein DA1-related 1 456 515 - -
Glsi10g0266 824 MobiDBLite consensus disorder prediction 749 770 - -
Glsi10g0266 824 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 488 542 - -
Glsi10g0266 824 FunFam Type IV inositol polyphosphate 5-phosphatase 11 32 338 - -
Glsi10g0266 824 Gene3D Endonuclease/exonuclease/phosphatase 34 346 IPR036691 -
Glsi10g0266 824 Gene3D Cysteine Rich Protein 457 533 - -
Glsi10g0266 824 MobiDBLite consensus disorder prediction 749 767 - -
Glsi10g0266 824 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 421 440 IPR003903 -
Glsi10g0266 824 SUPERFAMILY DNase I-like 46 333 IPR036691 -
Glsi10g0266 824 SMART lim_4 461 513 IPR001781 -
Glsi10g0266 824 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 390 409 IPR003903 -
Glsi10g0266 824 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 454 487 - -
Glsi10g0266 824 Pfam Endonuclease/Exonuclease/phosphatase family 57 322 IPR005135 GO:0003824
Glsi10g0266 824 SMART uim 390 409 IPR003903 -
Glsi10g0266 824 SMART uim 421 440 IPR003903 -
Glsi10g0266 824 ProSitePatterns LIM zinc-binding domain signature. 462 496 IPR001781 -
Glsi10g0266 824 CDD LIM_DA1 462 514 - -
Glsi10g0266 824 Pfam Protein DA1 611 818 IPR022087 -
Glsi10g0266 824 PANTHER PROTEIN DA1-RELATED 2 348 823 IPR045218 -
Glsi10g0266 824 CDD LIM 489 564 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi10g0266 Glsi-ChrGlsi10 1788315 1799235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi10g0266 35 333 Acyl Lipid Metabolism Gene Families AT2G43900 27.174 2.35e-25 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi10g0266 Exo_endo_phos 3.5e-07 CL0530
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi10g0266 10 1788315 1799235 Glsi10g0266 10 1788315 1799235 ECH